KEGG   Paludibaculum fermentans: IRI77_14725
Entry
IRI77_14725       CDS       T06895                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pfer  Paludibaculum fermentans
Pathway
pfer03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pfer00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IRI77_14725 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfer03400]
    IRI77_14725 (ligD)
Enzymes [BR:pfer01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IRI77_14725 (ligD)
DNA repair and recombination proteins [BR:pfer03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IRI77_14725 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M SCP2_2
Other DBs
NCBI-ProteinID: QOY91147
UniProt: A0A7S7SMD1
LinkDB
Position
3771342..3773870
AA seq 842 aa
MALEHYRSKRDFKKTPEPTPGRIRAKGKKLSYLIQKHDATRLHYDFRLELDGVLLSWAVT
KGPSLDPADKRLAVRTEDHPLSYGQFEGTIPGGQYGGGTVMLWDDGHWEPKGDPHAGLKK
GHLSFLLHGQRLKGGWGLIRMRGDGKRENWLLVKEKDDEARPDETNEEFLGGLDSSVKTG
RSMEQIAGPRAPAPHGKVRAIQRKAQQVLGSDRPLERLMELHPAVQLATLVEEPPQGDEW
LHEIKFDGYRLLGFAAGGAAALRTRNGHDWTVRFPSLAAALKKLKVKDAVLDMEAVVVDG
RGKSSFQALQTALGDGGRPEEIDAYVFDLLHLDGQDLTGLPLTERKKKLETLLKRSKQKS
LHYSAHIDGDGGAVFAQVCETGLEGIISKRATASYVAGRQKSWLKIKCSLRQEFIILGFS
DARTGGRALGALYLGYRKQGALHYAGKVGTGFSLASARALRQRFDAMATRKPTLSRGETT
GLGEGEWKTVHWIRPSLLCEVAFAEWTQDGHIRHPSFLGLREDKEARDVKQETPVKSSAA
PAPRKKKAAAEGLVLAGVTITHPDRILSADGQVTKGELAEYYAAIAPLMLPQVAGRPLSL
LRCPSGIDAECFFQRNPGKGFGPDVKPFAFRHKGKEYEYLYIEDEKGLLEVVQMGTIELH
PWGAPVDAIDYPDRMIFDLDPAPEVPFEAVKLAAQDLRQQLQLLGLESSLKCTGGKGLHI
TVPLDGTEKWPAVKAFAAWVAQQMVEATPEAYVATMSKAKRKGKIFIDHFRNDYTATAIA
DYAVRARPGAPVALPLEWKELKDLQSASQFTMKEVLARIKNKRRVPPVRPPAQSLPKLAA
AR
NT seq 2529 nt   +upstreamnt  +downstreamnt
atggcgctcgagcactaccgcagcaaacgcgatttcaagaagacgcccgagcccacgccc
ggacggatccgggcgaagggcaagaagctgtcgtatctcatccagaagcacgacgccacg
cggctgcactacgacttccggctggaactggacggcgtccttttgagctgggcggtcacc
aaagggccgagcctcgatcccgccgacaagaggctggcggttcgcacggaggatcatccc
ctctcctatggccagttcgaggggaccattcctggaggccagtatgggggcggcaccgtg
atgttgtgggacgacggccactgggagcccaagggggatccgcatgcggggctgaagaag
ggccacctttctttcctgcttcatgggcagcgcctgaagggcggctgggggctcatccgc
atgcgcggggacggcaagcgggagaactggctcctggtgaaggagaaggacgatgaggcg
cgtcccgatgaaacgaatgaggagttccttggcgggctcgattccagcgtcaaaacagga
cgatccatggagcagatcgcgggcccgcgggctccggccccgcacggcaaagtgagggcg
atccagaggaaggctcagcaggtgctcggatccgacaggcctctggagcgcctcatggag
cttcacccggccgtccaattggccacgctcgtcgaggaaccgccccagggcgacgaatgg
ctgcatgagatcaagttcgacggctaccgtttgctcggttttgccgccggaggcgccgct
gcgctgcggacacggaacggccacgactggaccgtgcgttttccttcgctggccgcggcc
ttgaagaagctgaaggtgaaagacgcggtcctcgatatggaggcggtggttgtcgatggg
cgcggcaagagcagtttccaggccctgcagactgcgctgggcgacggaggcaggccggaa
gagattgacgcttatgttttcgacctgctccatctcgatggccaggatctgaccgggctg
ccgctgaccgagcgaaagaagaagctggaaaccctgctgaagagatcgaaacagaagagc
ctgcactacagcgcgcatattgacggtgacggcggcgcggtgttcgcccaggtttgcgag
accgggctggaggggatcatctcgaagcgcgccactgcgtcgtatgtcgcggggcgacag
aagagctggttgaagatcaaatgctcgctgcggcaggagttcatcattcttggcttcagc
gacgcgcgcacaggcggccgcgctctgggcgccctgtacctgggatatcggaagcagggc
gccctgcactatgcaggcaaggtggggacgggtttttccctggcctccgcccgtgccttg
aggcagcgtttcgacgcaatggcgaccaggaagccgacgctatccagaggtgagaccacc
ggactgggcgaaggggaatggaagactgtccactggatccggccttcactactttgcgag
gtcgcctttgccgaatggacccaggacgggcatatccggcatccctcgttcctggggctg
agggaggacaaggaggctcgcgatgtcaaacaggagacgcccgtgaagagttcggcagcc
ccagcgcccaggaagaagaaggccgcggctgaaggcctggtcctggccggcgtcactatc
actcatcccgaccggatcctgtccgccgacggtcaggtgaccaagggcgaactcgcggag
tattatgccgcgatcgcgccgctaatgctgccgcaagtggcgggccggccgctgagcctg
ctgcgctgcccctccgggatcgacgcggagtgcttcttccagcgcaatccgggcaagggt
tttggcccggacgtgaagccattcgccttccggcacaagggcaaggaatacgagtatctc
tacatcgaggatgaaaagggcctgctggaggtcgtgcagatgggcaccatcgagttgcat
ccgtggggcgcgccggtggatgcgattgactatcccgaccggatgattttcgatctggac
cccgctccggaggtaccgttcgaggcggtcaagctggccgcgcaggacttgcggcagcag
cttcaactgctgggactggaatcttccctgaagtgcaccggcggcaaaggactgcatatt
acggtgcccctggacggcaccgagaagtggccggcggtgaaggccttcgcggcctgggtg
gcccagcagatggtggaggccacaccggaggcctatgtcgccaccatgagcaaggccaaa
cggaagggcaagatctttatcgatcacttccgcaacgactacacggccacagctattgcc
gactatgcggtccgagcgcggccgggggctccggtggcgctgccgctggagtggaaagag
ctgaaggatttgcagtccgccagccagttcacgatgaaggaggttctggcgcgcatcaaa
aacaaacggcgcgtaccgccggtacgccccccggcgcagtcgctgcccaagctggcagca
gccaggtag

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