Paludibaculum fermentans: IRI77_19455
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Entry
IRI77_19455 CDS
T06895
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pfer
Paludibaculum fermentans
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfer03400
]
IRI77_19455
Enzymes [BR:
pfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IRI77_19455
DNA repair and recombination proteins [BR:
pfer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
IRI77_19455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
ADDB_N
UvrD_C
AAA_30
AAA_16
AAA_19
AAA_22
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QOY85027
UniProt:
A0A7S7SGN9
LinkDB
All DBs
Position
complement(4967841..4970483)
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AA seq
880 aa
AA seq
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MRLLLGEPGSGKTTAILREVRRHLRASSAAFRLIVPTATMAEHLRNSLAREGLVVRSSTI
TTIAGFVESLKPSQSLAPSTALTLFLRQILADGQSRAFAALAGSPGFAAALARALEDLAN
AGCDSLQWAALRGLGVHSGPFAAGLQQVYEQLEARLAGQSMVFRAQQLASVARDVRERGL
GGLQSLYFDGFFSFTRSEIELMRSLKLHADLTVALPEWTGVAASRDALRQMGLREQRLSP
VRTTPQTTLVSASSREREVEEIALRMLALHADGRPWREMGVVLRSAHPYLPLFETTFARL
GVPARSYFVSPLAGHPVCRFITLLIDALQSGWEWRRTAQALRSAVTLAGQEPSADLLELE
VREALPGSGLAELAARVSLPAHWLAAWGGMTSWSSVPAPAAEWAQRIAGLASLVAPPEPG
GDPSTLQVWRTRAAALRSMQAALTQLAGLLGPEPMLLEGFWRQAQEVLKETSLRVADPRR
EAVHLLDVHEARQWELPVVFLCGLLEGDFPRKVAPDPVLSEETRFKLRTNGVPVSNRADK
QAEEAFLFQFALTRASQSLVLSWPTKDPDGRPTLRSFALDFINQEPDAARGLRVTPQRVV
PLPPRPALQSDPALAFVRAKHRQHRPTAIESYLQCPFQFFAGKTLELQPLPQLPHERLDF
VAQGIVIHAVISDWHRGLGSLEGLFERHWAAMLAQRRIPASHRVELARLLIERSLRFYEQ
NARVLPGWKVETERPLRLQIEGVPVTGRADRVDTSEAGESIVYDFKYSGQSGIKRRLDQL
EAGLTVQGGLYLAALKVEGLEPLAFVYVGLRGDTIYEEFTQREQVEALMGQAVQAAGQSI
LQIAAGRISVQPADEAACRYCNFLDACRVQSALQVETVTS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttctgctcggcgaaccgggctcgggaaaaacaacggccatccttcgcgaggtg
cggcgacacctgcgcgcctccagcgcggccttccggctgatcgtgccgacggccacgatg
gctgagcatctgcggaattccctggcgcgcgaagggttggtggtgcgcagttcgacgatc
actacgatcgccggattcgtcgagagcctgaagccgtcccagagcctggcgccgtccacc
gcgctgacgctgttcctgcggcagattctggccgatgggcaatcgcgcgcgttcgccgcg
ctggccggaagtccggggtttgccgctgccctggcccgtgcgctggaggatctggccaat
gctggctgcgattccctgcagtgggctgcgttgcgcgggctgggggtgcactccggcccg
tttgccgccggcttgcagcaggtttacgaacagttggaagcgcggctggccgggcagtcg
atggtgttccgcgcccagcagttggcctccgtcgcgcgagatgtccgtgaacggggcttg
ggcggcctgcagtcactgtacttcgacgggttcttttcatttacccgctctgaaatcgag
ctgatgcggtctttgaagctgcatgcggatctgaccgtcgcactgccggaatggacgggc
gtggcggcctcccgggatgcgctgcggcagatgggtttgcgcgagcagcggctctcgccg
gtcaggacgaccccgcagaccacgctggtttcggcgtccagccgggagcgggaggtggag
gagattgcgctgcgcatgctggcgttgcatgccgatgggcgtccctggcgcgagatgggt
gtggtgctgcggtccgcccacccgtatctgccgctgttcgagacgacttttgcgcggttg
ggcgtgccggcccgctcctacttcgtcagccccctcgcagggcatccggtgtgccggttc
atcactctcctgattgacgcgctgcagagcgggtgggagtggcggcggacggcccaggcg
ctacgctcggctgtgacgctggcggggcaggagccttccgcggatttgctggagctcgaa
gtccgggaggccttgcctggctccgggctggcggagttggcggcccgggtttcgctaccc
gcgcattggctggccgcttgggggggcatgacctcctggagcagcgtgcccgcccccgcg
gctgagtgggcccagcgtatcgcgggcctggcttcgctggtcgcaccgcccgagccggga
ggagatccgtcgacgctgcaggtctggcgtacccgggccgcggcgctgcggtcgatgcag
gccgccttgacccagttggccggcttgctggggcccgaacccatgctgctggaaggattc
tggcgacaggcgcaggaagttctcaaggagacgtccctgcgtgtggccgatccgcgccgg
gaggccgtccacctgctggatgtgcacgaggcgcggcagtgggagttgccggtggtgttc
ctctgcggtttgctggaaggcgattttccccgcaaggtggctccggatccggtgctctcg
gaagagacgcgcttcaagctgcggaccaatggggtccctgtgtcgaaccgggcagacaag
caggcggaagaagcatttctgttccagttcgcgctcacccgagcctcccagtcgctggtg
ctctcctggccgacgaaggatcccgacggccgtcccacgctgcgatcgttcgccttggat
ttcatcaatcaggagccggacgccgcgcgtggactgcgggtgacaccccaacgagttgtg
ccgctgccgccgcggcccgccctgcagtccgacccggccctggcttttgtgcgggcgaag
cacaggcagcatcgtcccacggcgattgaaagctatctgcagtgtccgtttcagtttttc
gccggcaagacgctggagcttcagcccctgcctcaattgccgcacgagcggttggacttc
gtcgcgcaggggatcgtcatccatgctgtgatttcggactggcaccgcggcctgggttcc
ctggaagggctgtttgagcggcactgggcggccatgctggcgcagcgccgcatccccgcg
tcgcatcgcgtggaattggcccggctgctgatcgagcgcagcctgcgattctatgagcag
aacgcgcgggtcctgcccggctggaaggtggagacggagcgtccgctgcggctgcagatt
gagggcgtgccggtaacgggccgtgcagatcgagtggatacctccgaggccggcgagtcg
atcgtctacgactttaagtattcggggcaatccggcatcaagcggcgcctggaccagttg
gaagccgggttgaccgtacagggcgggctctatctggctgcgttgaaggtggagggtctg
gagccgctggctttcgtgtacgtcggtttgcggggagatacgatctacgaggagttcacc
cagcgtgagcaggtggaagcgttgatgggccaggcggtgcaggctgccggccagagtatc
ctgcagatcgcggcgggccggatttctgtgcaaccggccgacgaagcagcctgccggtac
tgcaacttcctggatgcctgccgtgtgcagtctgctctacaggtggagaccgtaactagt
tga
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