KEGG   Paludibaculum fermentans: IRI77_23005
Entry
IRI77_23005       CDS       T06895                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
pfer  Paludibaculum fermentans
Brite
KEGG Orthology (KO) [BR:pfer00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfer03032]
    IRI77_23005
   03036 Chromosome and associated proteins [BR:pfer03036]
    IRI77_23005
   03400 DNA repair and recombination proteins [BR:pfer03400]
    IRI77_23005
DNA replication proteins [BR:pfer03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    IRI77_23005
Chromosome and associated proteins [BR:pfer03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    IRI77_23005
DNA repair and recombination proteins [BR:pfer03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      IRI77_23005
SSDB
Motif
Pfam: Bac_DNA_binding HU-CCDC81_bac_2 FliG_N HU-HIG DUF7342
Other DBs
NCBI-ProteinID: QOY85681
UniProt: A0A7S7NL85
LinkDB
Position
5855210..5855536
AA seq 108 aa
MAEVKKLTQTQLVKEIATATGISNKQAKAVLDKYVEIAIAQTKKVGLCVLPGIGRLKKVE
RKARTGRNPATGATIKIPAKKVVKLTLAKSLKDAIVPAPKPKAPKKKA
NT seq 327 nt   +upstreamnt  +downstreamnt
atggccgaagtaaagaaattgacgcagactcagttggtgaaggagatcgccaccgcaacc
gggatttccaacaagcaggcgaaggccgttctcgacaagtacgttgagatcgccatcgcc
cagacgaagaaggttggcctgtgtgtgttgcctggcatcggccgcctgaagaaagtggag
cgcaaggctcgtaccggccgcaatcctgccaccggcgccaccatcaagatcccggccaag
aaggtcgtgaagctgaccttggccaagtccctgaaggacgccatcgttccggcgccgaag
ccgaaggcccccaagaagaaggcgtag

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