Paludibaculum fermentans: IRI77_23735
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Entry
IRI77_23735 CDS
T06895
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfer
Paludibaculum fermentans
Pathway
pfer03030
DNA replication
pfer03430
Mismatch repair
pfer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IRI77_23735 (dnaE)
03430 Mismatch repair
IRI77_23735 (dnaE)
03440 Homologous recombination
IRI77_23735 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfer03032
]
IRI77_23735 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfer03400
]
IRI77_23735 (dnaE)
Enzymes [BR:
pfer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IRI77_23735 (dnaE)
DNA replication proteins [BR:
pfer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IRI77_23735 (dnaE)
DNA repair and recombination proteins [BR:
pfer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IRI77_23735 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DUF2630
Motif
Other DBs
NCBI-ProteinID:
QOY85819
UniProt:
A0A7S7NLL9
LinkDB
All DBs
Position
complement(6024314..6027787)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDKPFVHLHCHTDYSLLDGACEIGKLMKLAVKQNQPAVALTDHGNLFGAAEFYFKAKDN
GVHPVIGCEVYITPNDRRIKDETNRRYNHLVLLCENQEGYRNLIKLVSTASLDGFYYKPR
IDKDLLSQHSKGLIALSACLKGDINETLMNDKYDDAQKLAYEYRDLFGKDNFFLEIQDHG
LEEDKVVMPQVYRMSRETGIPLVASNDAHYLEHSDHRAQDILTCIQSGKLVSDEKRLKFS
TNEFFLKTREEMMTIFGEVEDALDRTWDIAQRCQVKMDPVKEPFPKFDVPPEQTIDSYFE
YVARQGFEKRRGKLDKMAAQGQLRFDMAEYIERLDREIKLIQQMQFSGYFLIVWDFIRYA
KSTGVPVGPGRGSAAGSLVSFCMGITDVDPLHYGLLFERFLNPERVSMPDIDVDFCTNRR
GEVIQYVTEKYGREQVAQIITFGTLAPKAAIKDVGRVLDMSFGEVDKLSKLIPADPKMTL
KKALDEEPAILEAAAKDPKVKEILDIAQRLEGMARNSGVHAAGVVISPVPLAEIVPLYRT
NKEEIVTQFEMSMLEKLGLLKMDFLGLTTLTIVHEALSLIKKTRGETLVLEDLPLDDKDA
YERIFGQGLTDGVFQFESSGMKDVLRRSHPERIEDLIALNALYRPGPIQNGFVDDYVDRK
LGRKPVTYDLPELKSLLEETYGLVIYQEQVMQVAQRIAGYSLGEADLLRRAMGKKKKEEM
DKQRARFLDGARKNGHPPKKAEALFDLLAKFAEYGFNKSHSAAYGYLAYLTGYLKAHYTV
EFLAALLTSETGNTDKVVKYINECRSLGIEVLQPDVNQSDLNFTPVGRDKIRFGLGAVKN
VGVGAVEAIVKARNEGGVFKSLDDFCERVDLSAVNRRVMESLIKAGAMDSLKGYRSQLFA
IIEDCIESGQRAQKDKLSGQTGLFGELIGDDSPSSSRALPRLNDWSQAEKLRGEKETIGF
YVSGHPLDEYRWKVTELTSYTTENLAGLEKGMEIAVCGILRSVQRRRNKEQKPWAITQLE
DWTGSVEALCFATRYEHLQKEIEEDKAVLVRGKAMPEEDGTIKLNIQEIIPLELARVNFP
SLVSIRVRLSATGNEKAEALQKLFTTKPGETSVRLKLEKPRDFAVTLDVTARIRPDKEFK
AEIERICGPEALEVIAS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacaagccgttcgtccatctacactgccacaccgactactcgctgctggacggg
gcctgcgaaatcggcaagctgatgaagctcgccgtgaagcaaaaccaaccggcggtggcg
ttgacggaccatggcaacctgtttggcgccgcggagttctacttcaaggcgaaggacaat
ggcgtccacccggtgatcgggtgcgaagtctacatcacgccgaacgaccggcggatcaag
gacgaaacgaaccggcgctacaaccatctggtgctgctgtgcgagaaccaggaaggctac
cggaacctgatcaagctggtgtcgacggcaagtctcgacggcttctattacaagccgcgc
atcgacaaggacctgctgtcgcagcacagcaaggggctgatcgcgctgtcggcctgcctg
aagggcgacatcaacgaaacgttgatgaacgataagtacgacgacgcgcagaagctggcg
tacgagtatcgcgatctgttcggcaaggacaacttcttcctcgagatccaagatcacggg
ctggaagaagacaaggtcgtgatgccgcaggtctaccgcatgtcgcgcgagaccggcatt
ccgctggtggcgagcaacgacgcgcactacctggagcacagcgaccatcgcgcgcaggac
attctcacctgcatccagtccggcaagctggtgagcgatgagaagcgcctgaagttctcc
accaacgaattcttcctgaagacgcgcgaagagatgatgactatcttcggcgaggtggaa
gacgcgctggaccgcacgtgggacatcgcacaacgctgccaggtgaagatggacccggtg
aaggagcccttcccgaagttcgacgtcccgccggagcagaccatcgacagctacttcgag
tacgtggcgcggcagggctttgagaagcgccgcggcaagctggacaagatggcggcgcag
ggccaactgcgcttcgacatggccgagtacattgagcggctggatcgcgaaatcaaactg
atccagcagatgcagttctcgggctacttcctcatcgtctgggacttcatccgctacgcg
aaatcgacgggcgtgccggtgggtccgggccgcggttcggccgccggctcgctggtgagc
ttctgcatggggatcaccgatgtggatccgctgcactacggcctgctgtttgagcgcttc
ctgaatcctgaacgcgtcagcatgcctgatatcgacgtggacttctgtacgaaccgccgc
ggcgaggtcatccagtacgtcaccgagaagtacgggcgcgagcaggtggcgcagatcatc
acattcggcacgctggctccgaaggccgcgatcaaggacgtgggccgcgtgctggacatg
agctttggcgaagtggataagctttcgaagctgattccggccgacccgaagatgacgttg
aagaaggctctcgacgaggagcccgcgatcctggaggccgccgccaaggatccgaaggtc
aaagagattctcgacatcgcgcagcgcctggagggcatggcccgcaactcgggcgtgcac
gccgcgggcgttgtcatctcaccggtgccgctcgccgagatcgttcctctctaccgcacc
aacaaagaggaaattgttacccagttcgaaatgtccatgctcgagaaactcgggctgctc
aagatggacttcctgggtctcaccacgctgaccatcgtgcacgaggcgctgtcgctgatc
aagaagacgcgcggcgagacgctggtgctggaagatctgcctctggacgacaaggacgcg
tatgagcgcatcttcggccagggcctgactgacggcgtcttccaatttgaatcgtcgggc
atgaaggatgtgttgcggcgctcgcatcctgagcgcattgaggacctcatcgccctcaac
gccctctatcgtccaggcccgattcagaacggcttcgtcgacgactatgtcgatcgcaag
ctgggccgcaagccggtcacgtacgatctgcccgagttgaagtcgctgctggaagaaacc
tacggcctggtgatctatcaggagcaggttatgcaggtggcgcagcgtatcgccggttac
tcgctgggtgaagccgatcttctgcgccgcgcgatgggcaagaagaaaaaagaggagatg
gacaagcagcgcgcccgtttcctcgacggcgcgaggaagaacggccatccgcccaagaag
gccgaggccctgttcgacctgctggcgaagttcgccgagtacgggttcaacaagtcacac
tcggcggcctatggctatctcgcctatctcaccggctacctgaaggcgcactatacggtg
gagttcctggcggcgctgctaacgtcggaaacgggcaacaccgataaggtcgttaagtac
atcaacgaatgccgctctctgggcattgaggtgctgcagcccgacgtgaaccagtcggac
ctgaacttcacgccagtgggccgcgacaagatccgcttcggtttgggcgcagtgaagaat
gtcggcgtgggcgcggtggaagccattgtgaaggctcgcaacgaaggcggcgtcttcaag
tcgctggacgacttctgtgaacgagttgatctctcggcggtgaatcgccgcgtgatggaa
agcctgatcaaagcgggagcgatggacagtctgaaaggctaccgctcgcagttgttcgcg
atcatcgaggactgcatcgaatccggccagcgcgcccagaaggacaagctcagcgggcag
actggtttgttcggcgagctcattggagacgactctccctcttcttcgcgcgcactgccc
aggctgaatgactggagtcaggcggagaagctgcgcggcgaaaaagagaccatcggcttc
tacgtcagcggccaccccctggacgagtatcggtggaaagtgacggagctcacgtcgtac
accaccgagaatctggcgggcctcgaaaaaggcatggaaatcgcggtctgcggcatcctg
cgcagcgtgcagaggcggcgcaacaaggaacagaagccttgggccatcacacagctcgag
gactggactggttcggtggaagcgttgtgtttcgccacccgctacgagcatcttcaaaaa
gagattgaagaggacaaagcggtgctggtgcgtggcaaggcgatgcccgaggaagacggc
acgatcaagctgaacatccaggagattattccgctcgagttggcccgtgtgaatttccct
tcgctggtctccatccgtgtgcggctttcggcaaccggcaacgagaaagccgaagcgttg
caaaagctgttcacgaccaagccgggcgagacctcagtgcggctgaagctggagaagccg
agagactttgcagtgacacttgatgtcacggcgcgcatccgtccggataaggagttcaag
gccgaaatcgagcgcatctgcggaccggaagcgcttgaagtgatagcctcgtag
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