Paludibaculum fermentans: IRI77_25885
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Entry
IRI77_25885 CDS
T06895
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfer
Paludibaculum fermentans
Pathway
pfer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IRI77_25885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfer03019
]
IRI77_25885
Enzymes [BR:
pfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IRI77_25885
Messenger RNA biogenesis [BR:
pfer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IRI77_25885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SNF2-rel_dom
AAA_30
HEM4
Helicase_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QOY86221
UniProt:
A0A7S7NMB1
LinkDB
All DBs
Position
complement(6557347..6558603)
Genome browser
AA seq
418 aa
AA seq
DB search
MNNFSELSLSPVLKENLVKNCFVEPTPVQAEAIPPALEGRDVVATAQTGTGKTLAFILPV
LESLLRTPIKSGVGALILSPTRELAIQIQETFQRLAAGSGLRAAVVVGGLNEQRQLHDIR
RGAQVIIATPGRLCDFLDRRLVRLGTVRHLVLDEADRMLDMGFMPALKMILAAMPAERQT
LFFSATIEQSVAHLINEHLKNPVRIAIGSATKPAEMVDLHVYEVEQDRKLGLLHSLLKAE
PGSVLVFARTKHGTDRLARKLSALGVKAARIHGDRTQNQRNEALKGFQQGHYRVLVATDV
AARGIHVDGIAHVVNYDLPQVPEDFIHRVGRTGRAGARGVASTFSTRNERSDIRRIERTI
KITLTRRPVGPEIEFEQNMKMAPVVVLPVAHHHHQTARPESSAPRGRRSFGPAARRRA
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacttttctgaactctctctgtctcctgtcctcaaggagaaccttgtcaaaaac
tgcttcgtcgaaccgactccggttcaggcggaagccattccgccggccctcgagggccgc
gacgtagttgccacggcgcagaccggcactggaaagacccttgcctttattctgcctgtg
cttgagtctctgctccggacacctatcaagtccggcgtgggcgctctcatcctgagcccc
acacgcgagctcgccatccagatccaggaaacgttccagcgtctcgccgcaggtagcggc
ttgcgcgccgccgtcgttgtgggcggcttgaacgagcagcgtcaactgcatgatattcgc
cgcggcgcacaggtgatcatcgccacgcccggccgtctctgtgatttcctcgatcgccgt
ctcgtccgtctcggcaccgtccggcacctcgtgctcgacgaagccgaccgcatgctggac
atgggcttcatgcccgctctcaaaatgatcctcgctgcgatgccggccgagcgccagacc
ctgttcttctccgcgaccatcgaacagtcggtggcccacctcatcaacgagcacctgaag
aaccccgttcgcatcgccatcggctccgctaccaagccggccgaaatggtggacctccat
gtctacgaagtggaacaggaccgcaagctcggcctgctgcactcgctgctgaaggccgaa
cccggctcagtgctcgtttttgcccgcaccaagcacggtacagaccgtctggcccgcaag
ctcagcgcgctcggcgtcaaggccgcccgtatccacggcgaccgcacgcagaatcagcgc
aatgaagctctcaagggcttccagcagggtcactaccgcgtcctggtcgccaccgacgtt
gccgcccgcggcatccacgtcgacggcatcgcccacgtcgtcaactacgacctgccccag
gtgccggaagacttcatccaccgtgtcggccgtaccggccgcgccggtgcccgtggcgtc
gcctccaccttcagcacgcgcaacgaacgctccgacatccgccgtattgagcgcacgatc
aagatcacgctcacgcgccgtcccgtcgggcccgagatcgaattcgagcagaacatgaag
atggcgcccgtcgtggtgctgcccgtcgcccaccatcatcatcaaacggcccgccccgag
agctcggctcctcgcggccgcagaagcttcggccctgccgcccgccgccgcgcctaa
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