Paludibaculum fermentans: IRI77_30725
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Entry
IRI77_30725 CDS
T06895
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pfer
Paludibaculum fermentans
Pathway
pfer02024
Quorum sensing
pfer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IRI77_30725
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
IRI77_30725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfer03019
]
IRI77_30725
03036 Chromosome and associated proteins [BR:
pfer03036
]
IRI77_30725
Messenger RNA biogenesis [BR:
pfer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
IRI77_30725
Chromosome and associated proteins [BR:
pfer03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
IRI77_30725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq_1
Hfq
LSM
KH_dom-like
ISP3_C
Motif
Other DBs
NCBI-ProteinID:
QOY87105
UniProt:
A0A7S7NP28
LinkDB
All DBs
Position
7753310..7753621
Genome browser
AA seq
103 aa
AA seq
DB search
MESPNRRLIRPPLAEPKERASSSARSSALQKKQAPPDTTNAENFYYVKQMQSKTPVVIVL
QDGEELNGVLEWYDKNCLKLTRDEGPNLLVYKSYIKYIYKQEG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
ttggagtcccccaatcgccgactgattcgtccgcctttagctgaaccgaaagagagggca
tcgagcagtgcgcgttcttccgccctccagaagaaacaggctccccccgacaccaccaac
gccgagaacttctattacgtcaaacagatgcagtcgaagacccccgtggtcatcgtgctg
caggacggggaagagctgaatggcgtgctcgagtggtatgacaagaactgcctcaagctg
acgcgggacgaggggccgaatctgctcgtctataagtcgtacatcaagtacatctataag
caggaagggtaa
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