Paludibaculum fermentans: IRI77_34020
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Entry
IRI77_34020 CDS
T06895
Name
(GenBank) DEAD/DEAH box helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pfer
Paludibaculum fermentans
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfer03019
]
IRI77_34020
Enzymes [BR:
pfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IRI77_34020
Messenger RNA biogenesis [BR:
pfer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IRI77_34020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
WH_Lhr
SecD_1st
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QOY87709
UniProt:
A0A7S7NQ85
LinkDB
All DBs
Position
8567477..8569792
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AA seq
771 aa
AA seq
DB search
MVGLVIALPVDALIPSILESLRTTPNLVLEAPPGAGKTTRVPAALLGALKGQILVLEPRR
LAARLAARRVASELGEQPGQTVGYQVRFEQVGGPSTRLRFLTEGVLTRQLLSDPDLKNVD
AVILDEFHERHLEGDLALALLHRLQQTRRPDLRLVVMSATLHGEPISAFLGGCPVLRSDG
RLFDLLVGYTPHSADSLETQVAEAVEALVKEQSQGDILVFLPGAAEIRRCQRALQRFADH
RGVLVLPLYGDLSPQEQDRAVAPSDQRKVILSTNVAESSITIEGVRAVVDSGLARIPKDN
PWTGLARIEIQRVAQASAVQRAGRAGRTGPGRVIRLYTKEDFLRRPAYDTAEITRRELAQ
LCLDLHAAGLRNPLDLQWLDSPPEAALVAAEDLLHRLGALDANGAITPFGRRIAALPLHP
RLAALAIHGGVEGCAAAAGLAAGNRPQAAQIEDQLLRLTSPKRSQHDPLPQAYLRAFPDR
VARRRKSNELLLSGGASAVLLNDKGVETAEFVVALDIEDRPDQGLPIVRQASPIQADWLL
DLFPDRVTARETVTWNRTAERVEAVSALLYDSLVLEESRGQTSDSEQAAALLAAKAVEAG
VHRFAEAESIQLLRNRAAFAGLPDVDLESALRRLSHGLSSFRELEQMTRDGGLERALVDG
LGPNAQRTLERAAPESIKLPSGRRAKVQYAPGQTPWVASRLQDFFGMAESPRIGDGTPLV
VHLLAPNRRPVQMTQDLAGFWERLYPQVRKELSRRYPRHSWPENPYNVYRD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggtaggtctcgtgatcgcactccccgtcgatgcgctgatcccctcgattctcgagtcg
ctgcgcaccaccccgaatctcgtactggaagccccgcccggagcgggcaagaccacgcgc
gtaccggctgccctgttgggcgcgctgaagggtcaaatcctggtgttggagccgaggcgt
ctggcggcccgtctggcggcccggcgggtcgcgtcggaactaggcgaacagcccggccag
acggtcgggtatcaggtcaggttcgagcaagtgggcgggccttccacgcggctgcggttc
ctcaccgaaggcgtgctgacccggcagctcctctccgacccggacttgaagaatgtggat
gcggtgatcctggatgagttccatgaacggcatctggagggtgacctcgcactagcgctg
ctgcaccggttgcagcagacccggcggccggatctgcggctggtggtgatgtccgctacc
ctgcacggcgagccgatctccgcatttctcggtgggtgtccggtgctgcgcagcgacggc
cggttatttgaccttttggtcgggtatacgccgcattcggcggattcgctggagacccag
gtggcggaagccgtggaagcgctggtgaaggaacagagccagggcgacattctggtgttc
ctgcccggagctgccgagatccgccgctgccagcgggcattgcagcgctttgcggaccat
cgcggtgtgctggttttgccgctctatggcgatctttctccgcaggaacaggatcgcgcc
gtcgcgccctctgaccagcggaaggtgattctgtccacgaatgtggccgagtcgtcgatt
acgatcgagggtgtccgggcggtggtggactcgggcctggcgcggatccccaaagacaat
ccctggaccggcctggcgcgcattgaaattcaacgggttgcgcaggcgtccgccgtgcag
cgggccggccgtgcggggcgcaccgggccggggcgcgtcatccggctttacaccaaggaa
gactttctgcgccgtccggcctacgacacggctgagatcacgcgccgggaactggcccag
ttgtgcctggacctgcatgccgcggggttgcgcaatcccttggatctgcagtggttggac
tctccgccggaggccgcgctggttgcggccgaagatctcctgcaccggctgggggcgttg
gacgcaaacggcgcgatcacccctttcggacgccggatcgccgccctgccgctgcatcct
cgcctggcggcgttggcgatccacggcggagtcgaaggctgtgccgctgccgcgggattg
gctgccggcaaccgtccccaggcggcgcagatcgaagaccagcttctgcggctgacttcg
ccgaaacgaagccagcacgatccgctaccccaggcgtacctgcgtgcatttccagaccgc
gtggcccgccgccgcaagtccaacgaactgctgctgagcggcggggcttcggcggtcctg
ttgaacgacaaaggcgtcgaaacggcggagtttgtggttgccctggatatcgaggaccgg
ccggaccaggggctcccgatcgtccggcaggcgtccccgattcaggcggactggctgctg
gacctgttccctgaccgtgttacggcgcgcgaaaccgtcacctggaaccgcacggcggag
cgggtggaggccgtcagcgcgctgctctacgacagcctggtactggaagaatcgcgcggg
caaacctctgattctgaacaggcggccgcgctgctggcggcaaaggccgtcgaggcaggg
gtgcaccggtttgccgaggcggagtccattcagcttttgaggaaccgcgcggcgtttgcc
ggtctccccgatgtcgatctggaatcggcgctacgcaggttgagccacgggttgagctcg
ttccgcgaactggaacagatgactcgggacggcggcctggagcgcgccctggtggacggg
ctcgggccgaatgcgcagcgcacgctggagcgggcggctccggaatccatcaaactgccg
tcgggccgccgcgccaaagtgcaatatgcgccgggccagaccccgtgggtcgcctcccgc
ttacaggactttttcggcatggctgagtcgcctagaatcggagacggaacgccgctggtg
gtgcacctgttggcgcccaaccggcggcccgttcagatgacccaggatctggcgggcttc
tgggaacgcctgtatccccaggtacggaaagagttgtcccggcgttatccaaggcactcc
tggccggaaaatccatataatgtctatagagattaa
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