Paludibaculum fermentans: IRI77_34405
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Entry
IRI77_34405 CDS
T06895
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03169
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pfer
Paludibaculum fermentans
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfer03032
]
IRI77_34405
Enzymes [BR:
pfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IRI77_34405
DNA replication proteins [BR:
pfer03032
]
Prokaryotic type
DNA Topoisomerases
IRI77_34405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Toprim
ResIII
HTH_45
SiaC
Motif
Other DBs
NCBI-ProteinID:
QOY87780
UniProt:
A0A7S7NQB3
LinkDB
All DBs
Position
complement(8657076..8661467)
Genome browser
AA seq
1463 aa
AA seq
DB search
MASQFSVAVIAEKPSVARDIARVLKATSTGQGYLHGNGFVVTWAIGHLVALAQPHEIRAD
WKWWKRETLPMLPEQWPLVIGEETKDQFEVVRKILTSPKISDVICATDAGREGELIFRYI
YEAAGSDKPVRRLWISSLTPDAIRDGFEKVKAGTAYDALADAARGRSRADWLVGMNLSRA
YTLGHGEDFSVGRVQTPTLAMVVERELAIRHFVPEDYYTVTAEFSPGDDRSYSGTWFRPG
GETLDASSRLPADGIEANAIVDRVKTGAAHIEKIEAQTKRMPPPGLYDLTELQRHANRLY
GMSAQRTLDTAQALYERHKLISYPRTDSRHLSADVAKTLPKIVAGISAPYQAHLAPGTGE
RPLNKRYVDDTKVTDHHAIIPTGVSAERASLNGEEERIFDLICRRLLSAWHDDHIWSVTT
VITLVRSTPSSGSSTPSSETSSQLSASSRPSSEPTSPSGGRTPSSAADPLVGTTNHLNPA
PSSPSGRRTPSSAADPLVGTTNHLNPAPSSPSGRRTPSSAADPLVGSNSIDDRFHSSGTA
IQQTGWKVLDIVTRKKEKKPRGASTEDTDDPGNTDDAQELPPGLTPNQRQTVLGADAIEK
RTRPPKRLTEGTLLTAMETAGKTLDDKELSDAMKESGLGTPATRAQIIEVLLKRGFIERR
GKSLEATDKGIRLIEVVHPEVKSPAMTGQWEAHLKRIERGQAELQPFLHGIEEYVREAVG
KAFSGAIAAERTQHTRVPTRDIVRAQRQAVTGSLDDILHTRFRFPGYRPNQEAVCRAVME
DKDVLLVMPTGSGKSLCYQLPGVARGGTTLVISPLIALMEDQVAKLNAMGFAAERIHSNR
DRAASRETCHAYLAGELDFLFIAPERLRVQGFPEMLARRKPTLVAIDEAHCISQWGHDFR
PDYRNIGQHLPGLRPAPVIALTATATPLVQRDIAVQLGLHSAESLIHGFRRENIAIEVVK
APPGSRAKLALELLQDDEHRPAIIYAPKRKDAEHLASLLAGSFPSAAYHAGMEADRREKV
QTGFLQGKLEVIVATTAFGMGVDKADVRTVIHTALPSSVEGYYQEIGRAGRDGLPARAIL
MHSYADRYTHDFFYERDYPEPDIVAKIFKALTPDAQPKDLVRARVRMAEDEFDIAMEKLW
IHGGAVVDYAENLSLGSVQWRESYIEQREHKMAQFQKMLSYCEVSSCRMLALLRYFGDSE
DLNRRCGHCDICAPDETIAQQLREATPKETARATQIIEALKKIEAVSAGRLYTQVFPDAV
LDRRAFEELIGAMARSGLIVITDTSFTKDGKEIEFRRVRISDAGWAEDAVAALRLPVEIE
AIPKAKRSRKKTAAGAERAPRQASKAVEAKPKRERKPRSTSKSETKPPKRPAAELEHAAS
APRAATPPPARNLKLEDALKAWRLGEAKKKGLPAFRILTDRTLQTIAAKRPQTTRELLEV
PGMSLRLVEQYGAPIFRIIEKAG
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcaattcagcgtcgcagtgatcgccgaaaagccttccgtggcacgcgacatt
gcgagagttctcaaagcaaccagtaccggccagggctacctgcacggcaacggcttcgtc
gtcacctgggccatcggccacctcgtcgccctcgcccagccccacgaaatccgcgccgac
tggaaatggtggaaacgcgaaaccctccccatgctccccgaacaatggcccctcgtcata
ggcgaggagaccaaggaccagttcgaggtcgtccgcaaaatcctcacctcccccaagatc
tccgacgtcatctgcgccaccgacgccggccgcgaaggcgagctcatcttccgctacatc
tacgaagccgccggctccgacaagcccgtccgccgcctctggatctcctccctcaccccc
gacgccatccgcgacggcttcgaaaaggtgaaagccggcaccgcctacgacgccctcgcc
gacgccgcccggggccgcagccgcgccgactggctcgtcggcatgaacctctcccgcgcc
tacaccctcggccacggcgaggacttctccgtcggccgcgtccagacccccaccctcgcc
atggtcgtcgaacgcgaactcgccatccgccacttcgtacccgaggactactacaccgtc
accgccgaattctcccccggcgacgaccgctcctactcgggcacctggttccgcccgggc
ggcgaaaccctcgacgcttcctcccgcctgcccgccgacggcatcgaagccaacgccatc
gtcgaccgcgtcaaaaccggagccgcccacatcgagaagatcgaggcccagaccaagcgc
atgccgccgcccggcctctacgacctcaccgagctccagcgccacgccaaccgcctctac
ggcatgagcgcccagcgtaccctggacacggcccaggccctctacgaacgccacaagcta
atcagctacccccgcacggacagccgccacctctcggccgacgtcgccaaaaccctgccc
aaaatcgtagccggcatctccgccccctaccaggcccacctcgcccccggcaccggcgaa
cgccctctaaacaaacgttacgtggacgacaccaaggtcaccgaccaccacgccatcatc
ccgaccggagtctccgctgagcgagcatccctaaacggcgaggaggagcgcatcttcgac
ctcatctgccgccgtctcctctccgcctggcacgacgaccacatctggtcggtaaccacg
gtaatcaccctggtccgaagcaccccgtcatccggttcctccaccccgtcatccgaaacg
tccagccagttatccgcgtcatcccgcccgtcgtccgaaccaacctccccgtcaggaggg
cggacgccctcgtccgcagccgaccccctggtcggcaccacgaaccacctcaacccagcc
ccatcctccccgtcaggacggcggacgccctcgtccgcagccgaccccctggtcggcacc
acgaaccacctcaacccagccccatcctccccgtcaggacggcggacgccctcgtccgca
gccgaccccctggtcggctcaaactccatcgacgaccgcttccactccagcggcaccgcc
atccagcaaaccggctggaaagtcctcgacatcgtcacccgcaaaaaagaaaagaaaccc
cgaggcgcctccaccgaagacaccgacgaccccggcaacacggacgacgcccaggaactc
ccccccggcctaacccccaaccagagacaaacggttctcggcgccgacgccatcgaaaag
cgcacccgcccccccaagcgcctcaccgaaggcaccttgctcaccgccatggaaacggcc
ggcaaaaccctcgacgacaaggagctctccgacgccatgaaggagagcggcctcggcaca
cccgccacccgggcccagatcatcgaagtcctcctgaaacgcggcttcatcgagcgccgt
ggcaagagcctggaagccaccgacaaaggcatccgcctcatcgaggtcgtccaccccgaa
gtaaaaagccccgccatgaccggccagtgggaagcccacctcaaacgcatcgaacgcggc
caggccgaactccagcccttcctccacggcatcgaggagtacgtccgcgaagccgtcggc
aaagccttcagcggagccattgccgccgagcgcacccagcacacccgcgtccccacccgc
gacatcgtccgcgcccaacgccaggccgtcaccggctccctcgacgacatcctccacacc
cgcttccgcttccccggctatcgccccaaccaggaagccgtctgccgcgccgtcatggaa
gacaaggacgtcctcctcgtcatgcccaccggctccggcaaatccctctgttaccagctc
cccggagtcgcccgtggcggcaccaccctcgtcatcagccccctcatcgccctcatggag
gaccaggtcgccaagctcaacgccatgggcttcgccgccgaacggatccactccaatcgc
gaccgcgccgcctcccgcgaaacctgccacgcctacctcgccggcgaactcgacttcctc
ttcatcgcccccgaacgcctccgcgtccagggcttccccgagatgctcgccaggcgcaaa
cccaccctcgtcgccatcgacgaagcccactgcatctcccaatggggccacgacttccgc
cccgactaccgcaacatcggccagcacctgcccggcctccgccccgcgcccgtcatcgcc
ctcaccgccaccgccacccccctcgtccagcgcgacatcgccgtccagctcggcctccac
tccgccgaatccctcatccacggcttccgccgcgaaaacatcgccatcgaagtcgtcaaa
gccccgcccggcagccgcgccaaactcgccctcgagctcctccaggacgacgaacaccgc
cccgccatcatctacgcccccaaacgcaaggacgccgaacacttggcgagcctcctcgcc
ggctccttcccctccgccgcctaccacgccggcatggaagccgaccgccgcgaaaaagtc
cagaccggcttcctccagggcaaactcgaagtcatcgtcgccaccaccgccttcggcatg
ggcgtcgacaaagccgacgtccgcaccgtcatccacaccgccctgccctccagcgtcgaa
ggctactaccaggaaatcggccgcgccggccgcgatgggctccccgcccgagcgatcctg
atgcactcctacgccgatcgctacacccacgacttcttctacgagcgcgactaccccgaa
ccggacatagtcgccaaaatcttcaaggcgctcacccccgacgcccagcccaaggacctc
gtccgagcccgcgtccgcatggccgaagacgaattcgacatcgccatggaaaaactctgg
atccacggcggagcggtcgtcgactacgccgaaaacctcagcctcggctccgtgcaatgg
cgtgaatcctacatcgagcagcgcgagcacaagatggcgcagttccagaagatgctttcg
tactgcgaagtctcctcctgccgcatgctggccctgttgcgctacttcggagacagcgag
gacctgaaccgccgctgcggccactgcgacatctgcgcccccgacgagacgatcgcccag
cagctccgcgaagccacccccaaggaaaccgcgagagccacccaaatcatagaggccttg
aagaagatcgaagccgtctcggccggccgcctctacacccaggtcttccccgacgcggtc
ctggaccgccgcgcctttgaagaactaatcggagccatggcccgcagcggcctgatcgtg
atcacggacacgtcgttcaccaaggacggcaaggaaatcgaattccgccgcgtccgcatc
tcggacgccggctgggccgaagacgcggtagcggccctccgcctaccggtagaaatcgaa
gcaatcccgaaagctaagcggagccgcaagaagacggccgcgggcgccgagagagcgccg
aggcaagcatccaaggcggtcgaggcaaaacccaagcgcgagcgcaaaccgaggtcaacg
tccaaatcggaaaccaagccccccaagcgcccagcagccgaattggagcacgccgcctcc
gccccgagggccgcgaccccgccgcccgccaggaacctgaaactggaagacgccctgaaa
gcctggcgcttaggcgaagcgaaaaagaaaggcctcccggcgttcaggattctgacggac
cggacgctccaaaccattgctgccaagagaccccagacgaccagggagttgctggaggtg
ccgggcatgagcctgaggctcgtggagcagtatggcgcgccgattttccggattattgag
aaggcggggtga
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