Pseudomonas simiae PICF7: PFLUOLIPICF700565
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Entry
PFLUOLIPICF700565 CDS
T03767
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pff
Pseudomonas simiae PICF7
Pathway
pff03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFLUOLIPICF700565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pff03400
]
PFLUOLIPICF700565
Enzymes [BR:
pff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFLUOLIPICF700565
DNA repair and recombination proteins [BR:
pff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFLUOLIPICF700565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AJZ92168
LinkDB
All DBs
Position
121003..124452
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagcgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcacttccccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgtatcgccagcctgtaccgcctgccggaa
ctggcccatggcgtgctggtggtgccaattaccacggcgctgcatcgtctggcgccgacc
aagttcctgctgggcagcagcctggtgctggatatcggtcagaagctcgacgtggaacag
atgcgcacgcgcctggaagccagcggctaccgctgcgtggacacggtgtacgagcacggc
gaattcgccgtgcgcggggcgctgatcgacctgttcccgatgggcagcaagttgccgtac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgtaccttcgatccggaaaaccag
cgctccattgataaagtcgactcggtcaagctgctccccgcgcgggaattcccgctgcaa
aaagacgcggtcacccgcttcaaggcgcgcttccgtgaacgcttcgacgtggacttccgc
cgctgcccgatcttccaggacctcagcagcgggattaccccggccggtatcgagtactac
ctgccgttgttctttgacgaaacctccacccttttcgattacctgccccaggacacccag
gtgttctcgctgccgggtatcgaacaggccgcagaaaacttctggaacgacgtgcgtaac
cgctatgaagagcgccgcgtcgatccgtcccgtcctttattgccgcctgcagaactgttc
ctgccagtggaagactgcttcgcgcgcctgaaaagctggccgcgtgtggtcgccagccag
caggatgtggaaaccggcgctggccgtgaacgcttcccggcggcaacactgccggacctg
gcgatccaggccaaagccacgcaaccgctggaagcgctgtccaacttcctcggcgacttc
cctggccgcgtgctgtttaccgccgaatccgcaggccgtcgcgaagtgctgctggaactg
ctcgaacgcctgaagctgcgaccgaaaaccgtcgacagctggcccgattttgtcaaaagc
aaagagcgcctggcgatcaccatcgcgccactggacgaaggcctgttgctggatgatccg
gctctagcgctgattgccgaaagcccgctgttcggccagcgtgtgatgcagcgccgccgt
cgtgaaaaacgcgccgatgccaacaacgatgccgtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtcggccgctacctgggcttgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctatgtaccggtggccaacctgcatttgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgttgcaccgcttgggctcggagacctggcagaaagccaagcgcaaggccgcc
gaacaagtgcgcgacgtcgccgccgaactgctcgacatctatgcacgccgcgcggcgcgc
gaaggttacgcgtttgccgacccgaaagccgactacgccaccttcagcgccggcttcgct
ttcgaggaaaccccggaccagcaaaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagcccatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgccgcttttattgccgtgcatggcggcaagcaagtggcgattctggtccccacc
accttgctcgcccagcagcactacaacagcttccgcgaccgctttgccgattggccagtg
accgtggaagtcatgagccgcttcaaatcggccaaggaagtgaatgcggccatcgccgat
ttggccgaaggcaagatcgacatcgtgatcggcacgcacaagctgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgctttggtgtgcgtcag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctcaccctcaccgccacaccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgatctgtcgatcatcgccacg
ccgccggcacgtcgcctgtcggtgcgcaccttcgtgatggagcagaacaagagcacggtc
aaggaagcgctgttgcgcgaactgctgcgcggcgggcaggtttactacctgcacaacgac
gtaaaaaccatcgagaaatgcgccgccgacctcgccgagctggtgccggaggcgcgtatc
gccatcggccacggccaaatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaaacgcttcaacgtgctgatcgcctcgaccatcatcgagaccggtatcgacgtgcca
agcgcgaacaccatcatcatcgaacgggcggacaagttcggcctggcccaactgcaccaa
ctgcgcggccgggtggggcgtagtcaccaccaggcgtatgcctacctgctgacgccgccg
cgccaacagatcacctccgacgccgaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgccggttttgtactggccaccaacgacctggaaatccgtggtgccggtgaactg
ctgggcgacggccagagcgggcagatccaggcggtcggtttcaccctgtatatggagatg
cttgagcgcgcggtgaaagccatccgcaaaggcgagcaaccgaacctcgatcaaccgctg
ggcggcggtccggagatcaacctgcgcttgccggcgttgattcccgaagactacctgccg
gatgtgcatgcgcggctgatcctgtacaaacgcatcgcctcggccaccgacgaagaaggt
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgttgccggaaccgaccaag
aacctggtgcgcctgaccctgctgaaattgcaggccgagcagcttggcatcaagaaagtc
gacgccgggccgcagggtgggcgcatcgagttcgaggcgcagacaccggtggatccactg
gtgctgatcaagctgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgtgccgaagaacgctttaatacattggaggcgttg
ttcgagcgcctcatcccgaaatctgcttga
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integrated database retrieval system
