Pseudomonas simiae PICF7: PFLUOLIPICF700825
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Entry
PFLUOLIPICF700825 CDS
T03767
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pff
Pseudomonas simiae PICF7
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pff03016
]
PFLUOLIPICF700825
Enzymes [BR:
pff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PFLUOLIPICF700825
Transfer RNA biogenesis [BR:
pff03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PFLUOLIPICF700825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AJZ92215
LinkDB
All DBs
Position
complement(179236..180369)
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AA seq
377 aa
AA seq
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MAIDIHWICDNDSLGQHCAEWQQLPFVALDTEFMRVDTFYPIAGLIQIGDGVSAYLIDPL
TIDNWQPLAALLENPAVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNLGFSMGY
SRLVQAVLDIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVYTRLRPQLLDDKYAWV
LEDGAELVANLRREVDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPRNRII
REHSLWPLAKSQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRAGSVPMDQWPPAVAEPL
PVDAAALIKQLRAIGQAEAERLEMAPELMLRKKTLEALVKSGYPDGPYQLPDSLRGWRRE
LMGQALLDSLASAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggatctgcgacaacgatagcctcggccagcattgcgccgaa
tggcagcagttgccattcgtcgccctcgacaccgaattcatgcgggtcgataccttttat
cccattgccgggctgatccagattggtgatggcgtaagcgcttacctgatcgatcccctg
accatcgacaactggcaacccttggccgccttgctggagaacccggcggtgatcaaggtg
gtacacgcctgcagtgaagacctggaagtgttgctgcgcttgaccggcagcctgccagtg
ccgttgttcgacactcaattggccgccgcctatctgaacctcggtttctccatgggctac
tcgcgcctggtgcaagccgtgctggatatcgagctgcccaagggcgagacccgttcggac
tggctgcagcggccattgtcggagacgcaagtcagctatgccgccgaagacgcggtgcac
ttggccgaggtctacacgcgtttgcgcccgcagctgttggacgacaagtacgcctgggtg
ttggaagacggtgcggagttggtcgccaacctgcgccgcgaagtcgacccgtacgaggtg
taccgcgacgccaagctggcgtggaaactgtcacgcgcccagctcgccgtgctgcgtgaa
ctgtgcgcctggcgcgagcagcaggcccgcgcccgtgacctgccgcgcaaccgcatcatt
cgtgagcactcgttatggccgctggccaaatcccagccggataacctcgccgccctgggc
aagatcgaagacatgcacccgcgtaccgtgcgtcaggacggccagttcctactcgacctg
atcaagcgtgccggcagcgtaccgatggaccaatggccgcccgccgttgccgaaccgttg
ccggtggatgccgctgcactgatcaagcaactgcgcgccattggccaggctgaagccgaa
cgcctggagatggcgccggaactgatgctacgcaagaaaaccctcgaagccctggtcaaa
agtggctaccccgatggtccttatcaattgccagactcgttgcgtggctggcgccgcgag
ttgatgggccaggcgctgctcgacagcctggcctccgccggagaacagccttga
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