Pseudomonas simiae PICF7: PFLUOLIPICF703345
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Entry
PFLUOLIPICF703345 CDS
T03767
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pff
Pseudomonas simiae PICF7
Pathway
pff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLUOLIPICF703345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pff03019
]
PFLUOLIPICF703345
Enzymes [BR:
pff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLUOLIPICF703345
Messenger RNA biogenesis [BR:
pff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLUOLIPICF703345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AJZ92655
LinkDB
All DBs
Position
721837..723300
Genome browser
AA seq
487 aa
AA seq
DB search
MLKALKKMFGKSEAEPLAPDSSAPAPTAGSRNDGKQPARHAPAAQPKKPTVTPPEQAKPV
EPAAAPVAPKPRRERAPTPPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFPY
CTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIA
PTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQ
RGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAK
QWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVR
RIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN
FTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETLLGRKISCETPPTHLLR
PVERKRP
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaagatgttcggcaaaagcgaggctgagccgctcgcgcctgat
tccagtgctcctgctccgacagccggtagccgcaatgacggcaaacagcccgcacggcac
gcaccggctgcccagccaaagaagccaacggtgacaccgcctgaacaggcaaagccggtt
gaacccgctgccgcgccagtggcaccgaagccacgtcgcgaacgtgcgccaacgccgccg
gtgatcccatggaaactcgaagacttcgtcgtcgagccgcaggaaggcaagacgcgcttc
cacgatttcaaattggcgcctgaactgatgcacgccatccaggacctgggattcccgtac
tgcacaccgatccaagcgcaggtgctgggcttcaccctggccggcaaagacgccatcggt
cgcgcacagaccggcaccggcaagaccgccgcgttcctgatctcgatcattacccagttg
ctgcagacgccgccgccgaaagaacgctacatgggtgagccgcgcgcgctgatcatcgcc
ccgacccgggagctggtggtacagattgccaaggacgccgcagacctgaccaagtacacc
ggccttaacgtaatgacgttcgtcggcggcatggacttcgataaacagctcaagcacctc
gaagcccgtcactgcgacattctggtagccacgccgggccgactgctggacttcaaccag
cgcggcgacgtgcacctggacatggtagaagtgatggtactggacgaagccgaccgcatg
ctcgacatgggtttcatcccacaagtgcgtcagatcattcgtcagaccccgccgaaatcc
gagcgtcagaccctgctgttctccgcgaccttcaccgaagacgtgatgaacctcgccaag
cagtggaccaccgacccgtccatcgtcgagatcgaagcagaaaacgtcgccagcgagaac
gtcgagcagcacatctatgccgtggccggtgccgacaagtacaagctgctctacaacctg
gtcaacgacaacggttgggagcgcgtgatggtctttgccaaccgcaaggacgaagtgcgt
cgcatcgaagaacgcctggtgcgtgacggcgtcaacgctgcgcaactgtcgggcgatgtg
ccgcagcacaagcgcatcaagaccctcgaaggcttccgcgaaggcaagatccgcgtgctg
gtggccaccgacgtggccggtcgcgggattcacatcgatggcatcagccatgtgatcaac
ttcaccctgccggaagtgccggacgattacgtacaccgtatcggccgtaccggtcgtgcc
ggggcggcgggtgtatcgatcagctttgccggggaagatgactcgtatcagttgccgtcg
atcgagacgctgctgggacgcaagatcagctgtgaaacgccgccgacgcacctgttgcgc
cctgtcgagcgcaaacgcccgtaa
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