Pseudomonas simiae PICF7: PFLUOLIPICF710255
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Entry
PFLUOLIPICF710255 CDS
T03767
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pff
Pseudomonas simiae PICF7
Pathway
pff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLUOLIPICF710255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pff03019
]
PFLUOLIPICF710255
Enzymes [BR:
pff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLUOLIPICF710255
Messenger RNA biogenesis [BR:
pff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLUOLIPICF710255
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJZ93907
LinkDB
All DBs
Position
complement(2236224..2238104)
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AA seq
626 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKSASGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDVD
NFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAPRGGQPQGGRQNGPRNSSGGTTGTPPA
KRNGPRNGAPRDGQARREDSRSNNRRPARDDQQRSSEPAVQNPRGGPAPKIIHKESKADR
FPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgtttcccaatggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgtgttctggtcctgacccccacccgcgaactcgccgcccaggtgcacgacagcttcaag
ctgtatgcccgcgatttgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggtgtggacgtgctggtcgcgtgcccaggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgacctgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtgctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctcccaggacatcactgcc
ctggccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgcgtattccgcctggccgccagccacaagcgtgcgctgctg
gcccacctgatcaccgccggcgcgtgggaacaggtgctggtcttcactcgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggccgatttcaaggccggttccgtg
cgcatcctggttgccaccgatatcgccgcccgcggcctggatatcgaccaattgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggtgaagccatctccctggttgcaccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcgccgtggaggccgagaagcctgaagcgcgcgagcgtccggacgtgcgcaac
ccgcgcaacccacgcggtccgaagggcgatggcccgaacggcggcgggggtggcggtggc
cgtcgcgacaagggcaaagacaagggcaaggaaaaatctgccagcggccgtggcgaacgc
ccggcccgtgagcagaagccccgcgaaggcactccggcccgcgaacagcgccagccgagc
cagccgccacgcgctgctgccgaccgtgctccggacgagttcctggacgacgatgtggat
aacttcggtaaccgcgtcgactacgtgccccaggccaagccggcccaaggccgtggccgt
cgcccaggcgccccggcacagggcgctggcgcaggtgctccccgtggcggccagccacaa
ggtggtcgtcagaatggtccacgcaacagcagcggcggcactaccggtacgccgccagcc
aagcgcaatggcccgcgtaacggcgcgccgcgtgatggccaggctcgccgcgaagactcg
cgcagcaacaaccgccgcccggcccgtgacgaccagcaacgttcgtccgagccagccgtg
cagaacccacgtggtggtccggcgccaaagatcatccacaaggagtcgaaggctgatcgc
ttcccgacacccgagcagttggatcaactgccaggccgtcctcgtggtgaaaaaccagcg
ctgctgacgcgcaatcgctga
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