Pseudomonas simiae PICF7: PFLUOLIPICF711245
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Entry
PFLUOLIPICF711245 CDS
T03767
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pff
Pseudomonas simiae PICF7
Pathway
pff03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFLUOLIPICF711245 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pff03021
]
PFLUOLIPICF711245 (rpoB)
03400 DNA repair and recombination proteins [BR:
pff03400
]
PFLUOLIPICF711245 (rpoB)
Enzymes [BR:
pff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFLUOLIPICF711245 (rpoB)
Transcription machinery [BR:
pff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFLUOLIPICF711245 (rpoB)
DNA repair and recombination proteins [BR:
pff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFLUOLIPICF711245 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
AJZ94087
LinkDB
All DBs
Position
2448667..2452740
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgcggtgttacgtacgccgtacctttg
cgggtaaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccactgatgactgagaacggtaccttc
gttatcaacggtaccgaacgtgtgatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctctggtaagctcctgtactccgcgcggatc
attccttaccgtggttcgtggttggacttcgagttcgatccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgctcggctacacc
actgagcaagtgctggacgccttctacaccaccaacgtattcagcctgaaggatgaaacc
ctcaagctggagctgattgcttcgcgtctgcgtggtgaaattgctgtcctggacattcag
gatgaaaagggcaaggtcattgttgaagctggccgtcgtatcactgcgcgccacatcaac
cagatcgaaaaagccggtatcaaagagctggaagtgcctctggactacgtcctgggccgc
acgaccgccaaggtcatcgttcacccagctacaggcgaaatcctggctgagtgcaacacc
gagctgaacaccgaaatcctggccaaaatcgccaaggctcaggttgttcgcatcgagacc
ctgtataccaacgacatcgactgcggtccgttcatttccgacacgctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggtgagcca
ccaaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgagaaccagtttcgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctttcccagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgtgtatctgcactgggcccg
ggcggtctgacccgtgagcgtgctggctttgaagttcgtgacgtacacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gccgcttatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggtgaaa
gacgctctggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctggtcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgtg
tcgccgaagcaggtagtgtcggttgcagcgtcgctgatcccgttcctggagcacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgtaacgtagctcgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgattccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagtagaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgcgttcagcgcagcgacatcatggctgatggcccgtccaccgatatgggtgagctggct
ctgggccagaacatgcgtatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaagaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcacgtgacaccaagcttgggcctgaggaaatcactgcagacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagtaggcgcaggcgacatcctggtaggtaaggtcaccccgaaaggcgagacccaactg
actccggaagaaaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgtgtgcctaccggtaccaagggtactgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgatgctcgtgcactgtccatcgagaagacccagctcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgttccgccctggtaggccacaaggctgaaggcggcgcaggtctgaagaaaggtcaggac
atcaccgacgaaatcctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagtttgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggctggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgtatgattgaagagcagcgcaaggtcgcagacctgcgtaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacaccttctcc
gaccaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctcgttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
