Pseudomonas simiae PICF7: PFLUOLIPICF712500
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Entry
PFLUOLIPICF712500 CDS
T03767
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pff
Pseudomonas simiae PICF7
Pathway
pff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLUOLIPICF712500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pff03019
]
PFLUOLIPICF712500
03016 Transfer RNA biogenesis [BR:
pff03016
]
PFLUOLIPICF712500
Enzymes [BR:
pff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PFLUOLIPICF712500
Messenger RNA biogenesis [BR:
pff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PFLUOLIPICF712500
Transfer RNA biogenesis [BR:
pff03016
]
Prokaryotic type
tRNA degradation factors
PFLUOLIPICF712500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_N4BP1_2nd
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
AJZ94316
LinkDB
All DBs
Position
2703051..2705156
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVTELAAEAAKPTWTWAPQAEA
TELLGAIRSEFGAAISDAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggttatcaaaaaattccagttcggtcagtcgaccgttaccctcgagacaggc
cgtatcgcccgtcaagcctccggcgcagtgctggttaccgttgacgacgacgttaccgtt
ctggtgaccgttgttggcgccaagaccgctgacccgagcaaaggcttcttccctctttcc
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaaaaagaccgatccggacatcgctgcgatgatcggtacttcggctgccctggcgatc
tccggcattcctttcgatggtccgatcggcgcagcccgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaacagaaagcttcgagcctggacatggtcgtc
gccggtacctcggaagccgtgttgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggtgccgtactgttcgcgcacgacgagttccaggccgttatcaaggccgtc
accgagctggccgcagaagctgccaagccaacctggacctgggctccacaagccgaagcc
accgagctgctgggcgctatccgctccgagttcggcgctgccatctccgacgcctacacc
atcaccgtcaaggccgaccgttacgctcgtctgggcgagctgaaggatcaggttgttgcc
aagctgtccggtgaagaaggccagccttccgccagcgacgttaaagcggctttcggtgaa
atcgaataccgtaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgt
gacacccgcaccgtacgtccgctgaacatcgaagttggcgttctgccaaagactcacggt
tcggcgctgttcacccgtggtgagactcaggctctggtcgtcgcgaccctgggcaccgcc
cgtgacgcccaattgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttcccaccgttctcggtaggtgagtgtggtcgcatggggggcgctggtcgtcgc
gaaatcggtcacggccgtctggcccgtcgttcgatcgcggccatgctgcctgccgctgac
gtgttcccgtacaccatccgtgtggtctcggaaatcaccgaatccaacggttccagctcc
atggcgtccgtttgcggtgcttccctggcgctgatggatgctggtgtgccgatgaaggca
ccggttgccggtatcgccatgggcctggttaaagaaggcgagaagttcgccatcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggtcagtcgcgtaccgagctgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgactatccgtgcgatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgatggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcagcacgtcagcgcgtactgggcatcaccgcagaagcc
gagatcggcaagatctacgtgggtaaggttgaacgcatcgtcgacttcggtgcattcgtc
aacatcctgccgggcaaggacggtctggttcacatctccatgctgagcgacgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtgctggacgtg
gataaccgcggccgtatcaagctgtccatcaaggacgtagcagcagccaaggcttcgggc
gtttaa
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