Pseudomonas simiae PICF7: PFLUOLIPICF716390
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Entry
PFLUOLIPICF716390 CDS
T03767
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pff
Pseudomonas simiae PICF7
Pathway
pff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLUOLIPICF716390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pff03019
]
PFLUOLIPICF716390
03400 DNA repair and recombination proteins [BR:
pff03400
]
PFLUOLIPICF716390
Enzymes [BR:
pff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFLUOLIPICF716390
Messenger RNA biogenesis [BR:
pff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLUOLIPICF716390
DNA repair and recombination proteins [BR:
pff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFLUOLIPICF716390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
HTH_29
GerE
Motif
Other DBs
NCBI-ProteinID:
AJZ94997
LinkDB
All DBs
Position
3540638..3542764
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGYPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIE
GFGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRGEEREQWEALRTLRR
KLAQEHSVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEVLGGQAE
APKEVADIRHELISLARAGMTPVQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVAEIAPLFTGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggcacaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccagcggcggtgacgccctggtcctgatgcct
accggcggcggcaagtcgttgtgcttccaggtgccggcgctgttgcgcaatggcctggcg
gtggtggtgtcgccgttgatcgcgttgatggacgaccaggtggcgacccttgaagagctc
ggtgtcgccgctgcttcgttgaactctaccctcagtgccgagcagcagcgcgacctggcg
gcgcgtatcaagcgcggtgaagtgaagatgctgtacctggcccccgagcgtctggtgcag
ccgcgcatgctggcttttttgcagagcctggaaattgccctgttcgccatcgacgaagcc
cactgtgtgtcccaatggggtcatgactttcgccgtgagtatttgcaactgggtcaattg
gccgagctgtttcccgatgtgccgcgcattgccctgaccgccaccgccgacaagcgtacc
cgcgaagaaatcgtcgagcgcctgcacctgcagaacgccgagcgcttcctgtcgagcttt
gaccggccgaatattttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgttcctctcggagcgacgcagcgatgcgggcatcgtctattgcctatcgcgcaagaag
gtcgatgaagtcgccgcgtttctctgtgagcaaggctacccggcgctgccgtatcacgcc
ggcctgccgaatgacctgcgtgcctaccaccagaagcgcttcctcaacgaggaaggcctg
atcatggtggccaccatcgcgttcggcatgggcatcgacaagtccaacgtgcgattcgtc
gcgcacatggacctgcccaaatcccttgaggcgtactaccaggaaaccggacgtgccggc
cgtgatggtttgccggcggatgcgtggatggtctacggcctgcaggacgtggtgatgctc
aagcagatgctgcagaattccgagggcgacgagcgccacaagcgcctggagcaacacaag
ctcgacgcgatgctctcgctgtgtgaggagacccgctgccgccgccagaccttgctggcg
tatttcgatgaagacatgcccgaaccctgtggccattgcgacaactgtgttgacggcgtg
cagacctgggatgccactgagccggcgcgccaaggcttgtccgctatctaccgcaccggt
cagcgttacggcgtcggtcacctggtggacgtgttgctgggcaaggacaacgagaaagtg
cgcagcttcggccacgaaaaactctcggtctacggcgtcggcaaggcccgcgccgaaggc
gagtggcgctcgttgttccggcagatggtggcgcgtggcctggtggacatcgatatcgag
gggtttggcggcctacgtctgaatgacagctgccggccgttgctcaagggcgaagtcagc
ctggagctgcgccgcgacctcaagccgcaaaccaccgccaagagcagcaccagccaggcc
agccagttggtgcgtggcgaagaacgcgaacagtgggaagccttgcgcaccctgcgacgc
aaactggcgcaggaacacagcgtgccgccgtacgttattttccccgactccaccttgctg
gagatgctgcgtgagcagcccaccagcatggccgagatggcgcgggtcagtggggtgggc
gcgcgcaagctggagcgttatggccaggccttcctcgaagtgctcggcggccaggccgag
gcgccaaaggaagtcgccgatatccgccacgaactgatcagcctggcacgcgccggtatg
accccggtccagatcgccggtcagttgcaatgctcggagaagaacgtctacaccttgctt
gccgaatccatcggcaagcagcaactgtcgttggagcaggcccttgatttgccagaggat
ctgctcggtgaaatccaagacgcgttcttggacggagagggcgaattgccacctgtggcg
gagattgccccgctgtttaccgggcgtgttccggaaggtgttttgtactgcgtgcgggcg
gctttgcagtctgaattcgaaatttag
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