KEGG   Pseudomonas simiae PICF7: PFLUOLIPICF720360
Entry
PFLUOLIPICF720360 CDS       T03767                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pff  Pseudomonas simiae PICF7
Pathway
pff02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pff00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PFLUOLIPICF720360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pff03021]
    PFLUOLIPICF720360
Transcription machinery [BR:pff03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PFLUOLIPICF720360
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 PhyR_sigma-like GerE HTH_11 HTH_24 HTH_Mga HTH_Tnp_4 HTH_3 HTH_38 HTH_20 HTH_28 HTH_IclR HTH_Tnp_ISL3 HTH_31 HTH_17 HTH_10 DUF8612 HTH_40 DUF1804 TnsD
Other DBs
NCBI-ProteinID: AJZ95612
LinkDB
Position
4348676..4349218
AA seq 180 aa
MHDIPAAPGDSVRQQTLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQ
QIKEPRAFLATTAGRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIA
EMLAGLPAKAREAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCYHSLHPADPLA
NT seq 543 nt   +upstreamnt  +downstreamnt
atgcacgacattccggccgcgccaggcgactccgtccggcagcagacccttacggcgatg
tacagcgagcaccacggctggttgcacggctggctgcgcaagaaactcgggtgttcccag
catgcagcggacctcgcccatgacgccttcatccgcgtcttgatgctggccgaacctcaa
cagatcaaagagccccgcgcgttcctggccaccacggcagggcggttgctgatcgacggc
gcccgtcgtcgtcgcatcgaaaaagcctacatggaagccctggtgatccagtgcgaggac
gctggcatgcccgacccggccgcgattcatgtcgcgctgcaagccctggaacgtattgcg
gagatgcttgccgggctgcctgccaaggcgcgcgaagcgttcctgctgagccgcctcgac
gggctgacctacagcgaaatcgccacacgcctggacgtgtctgccagcaccgtcaaaaac
tacatctccagtgccttggttcactgctaccacagcctgcacccggcagacccgctggca
tga

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