Pseudomonas simiae PICF7: PFLUOLIPICF720990
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Entry
PFLUOLIPICF720990 CDS
T03767
Name
(GenBank) type IV secretion protein Rhs
Organism
pff
Pseudomonas simiae PICF7
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
Scabin-like
RHS
TEN_YD-shell
Enterotoxin_a
Pertussis_S1
NarE
PMT
Motif
Other DBs
NCBI-ProteinID:
AJZ95708
LinkDB
All DBs
Position
complement(4485383..4490155)
Genome browser
AA seq
1590 aa
AA seq
DB search
MIEVTSQTIGYLVLATLDSKTRDVESVISDFKRCLNHYDAWAESFFSFSALDIEQVFKVG
DEVALVAPINRSLFPSTITATCQANGTLTLVHMFQSSRFVPIGNTPVMVQRIDPTGGPLG
EPLHKTIGPSGILEITECDRNQQYRVSFYPNVSTAHFKALYASYQSVIAPLEGWLRAEWT
TTFEPLWKGYSEANFLERYLSLHQAYARGFGEALYALWDNIKQMFQWLSDPMGYVEKLLH
YLSQDEFEKLLKLGTESIAKGLLVLSDEPLLFIYVSAMVSWVRMLPPPYMNELLGEISAE
VLINLLLCLATAGMGMAVRLSTKVLGGIKSQRARKWLEHMAGQFGRFRGDDHAELAKPIL
LSSRATTIKKIPDVPLKAGDQVVANPVPVVRDKAQRTVLVRQEPVDDVPASARNPAGNAA
ASSDKTATNGCPVSMVTGEELLTLTDGTLDGLLPFEWTRLYRTSAVEMDCGLGFGWGHSL
AHRLSVSGDAVVWTDHESRSTALPLPTVSRPAITNSLAEAAIYLGSLPDELVLSQGSRFY
HFHDGALTAISDAYDNRLRISRNYLGQIERLDNGVGRSLFLRYASGRIVAVDYQIERAVD
DGPFVWVTEQNVVSYAYDAGGRLVCATNAVGESEVYRYDDQHVILERELAGGASFFWAWE
RSGKAARCVRHWASFSQMDTRYAWDDNGQVTVFNADGSQEVYVHDPRARLVQRVDPDGAQ
HFKSYDDKGRLTVEQDPLGAITAYQYDEAGRLVALFPGDDEPTTYEHDNGCVRVVRRGQA
VWKYERNDQGDVTRKTDPDGNATDYSYNKYGQLVGVWYPDHSCHRLVWNERGQLLEEQLP
NGGIKRYRYDDLGRQVAREDEHGALTQYQWDAAGRLLKLTQPGGATREYSYNAYGKITSE
RDELGHLTRYEYADGLHLISRRINADGTQVKYRYDNVRLLLTEIENEVGETYRLQYHANG
LIQQETGFDGQRTAYVYDLNGNLQEKTEHGDDGSQLVTRYERDHAGRLVRKTLPDGNQVD
YAYDRQGNLLSVENGHWALAYEYDSQNRLTAEHQGWGTLRYGYDACGQLQNLRLPDNNRL
TFNHDKGGHLATIELNGESLTSHLFKAGQELQRQQGQLISHYHYDDQQRLHAHAVTQQQH
TLYQRHYDYDKAGNLTRLLDTLKGEHHYHYDPLNRLTRADQERFGHDPASNLLMQDRPGP
DIVAGNRLMIQGDHHYDYDAFGNLIRERRGKGHQLVTEYRYDCQHRLIGIKKPNGQTASY
RYDPFGRRISKTVDGITTEFFWQGDTLIAEHHADRHRSYLYEPNTFRPLVLLEGFGPKET
ENYHYQLDHLGTPRELTASDGKIVWSAHYRAYGEITRLDIGKVDNPLRFQGQYFDEESGL
HYNRHRYYNPDNGRYLTPDPVKLAGGINAYQYVTNPTGWVDPLGLSTCPGGDGCKPHTNS
ENLNKQLNVDDGTPSLPASSKKQEYLYRGDSRHPDEIFETGFESRGKSTDLYLHSQNNAS
PPSNFVSTSISREQGLTFATSFGFEEGYLYTLKKIPGRDVNKELGILSDYKKEREIAIPN
RIDTKDILGATPVHDDGTHKGYSFINPNRK
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaagtgaccagccaaaccattggctatttggtactggccaccctggattcaaag
acgcgagacgttgaatcggtcatcagcgacttcaagcgctgcctcaatcactacgatgcc
tgggcggaaagctttttcagcttttcggcgctggatatcgagcaggtcttcaaggtcggg
gatgaagtggcgctggtcgcgccgatcaaccgctccctgtttcccagcaccatcaccgca
acctgccaggccaacggcacgttgaccctggtgcacatgttccaaagttcacggttcgtg
cccattggcaatacgcccgtgatggtgcaacgcatcgatccaacgggtggcccgctcggg
gagcccctccataaaaccattggcccgagcggcattctcgaaatcactgaatgtgatcgc
aaccagcagtaccgggtcagtttctaccccaacgtttccacagcgcatttcaaggcgctg
tacgcctcttaccagtcggttatcgcgccgctggaaggttggctgcgcgctgaatggacc
accacgtttgaaccgctgtggaaggggtattccgaagccaacttcctggaacgctatctc
tcgctgcaccaagcctacgctcgggggtttggtgaggcgttgtatgcgctctgggacaac
atcaagcagatgtttcagtggctttcggacccaatgggttacgtggaaaaactcctgcat
tacctgtcccaggatgaatttgaaaagctgttgaagctcggcaccgaaagcatcgcaaag
ggcttgttggtgctgagcgatgagccgctgctgttcatttatgtgtcggcgatggtcagc
tgggtgcggatgttgccgccgccttatatgaacgagttgctgggggaaatcagcgctgaa
gtattgatcaatttgctgctgtgtcttgctaccgcaggaatggggatggcggtgcgcttg
agtacgaaggtgctgggcggcatcaagtctcagcgagcgcgtaagtggttggagcatatg
gctgggcagttcgggaggttccgtggggatgaccacgcggagctggctaagccgatattg
ctcagtagccgggcaacgacgatcaagaagattccggatgtgccgttgaaggctggagat
caggtggttgccaacccggtgccggtagttcgggataaggcccaacgaacggtgttggtg
cggcaggagcctgtcgacgatgtgcctgcttccgctcgaaacccggctgggaatgccgct
gcgtcttcggacaagacagccaccaacgggtgcccggtgtcgatggtcacgggcgaggaa
ctgctgaccctcaccgatggaacgctggacgggctcttgccgtttgagtggacccgcttg
taccgcaccagtgcggtggaaatggattgcgggttggggtttggctggggtcactcgctg
gcgcatcggctgagtgtttccggcgatgcggtggtgtggaccgatcatgaaagccgctcg
actgccctgcccttgccgactgtttcgcgacctgcaattaccaacagcctggccgaagcg
gcgatctacttggggtcgctgcccgatgagttagtcctgtctcaagggtcacgtttctac
cacttccacgacggtgcgctgacagcgatcagcgatgcgtatgacaaccggctgcgcatt
tcccgtaactacctggggcagattgagcggttggataacggcgtcgggcgctcgttgttt
ttgcgctatgcgtcgggccgcattgtggcggtggattaccagattgagcgggccgtggat
gacggcccatttgtctgggtgacggagcagaacgttgtttcctacgcctacgacgctggt
ggacgactggtttgtgcaaccaacgctgtaggcgaaagcgaggtttaccggtacgacgat
cagcacgtgattcttgagcgcgaattggccggtggagcgagtttcttctgggcgtgggaa
cggtctggcaaggctgcacggtgcgtacggcactgggccagtttctcgcagatggacacg
cggtacgcctgggatgacaacgggcaggtcacggtgtttaacgccgacggcagccaggaa
gtctacgtgcatgacccgcgggcgcggctggtgcagcgcgtggaccctgacggtgcccaa
cactttaaatcctacgatgacaaaggccgactgacggttgagcaggatccgctgggagcg
atcacggcgtatcagtacgacgaagccgggcgtttggtcgcgctgtttccgggggacgat
gagccgacgacctacgagcatgacaatggatgcgtacgggttgtaaggcggggtcaggcg
gtctggaaatacgagcgtaatgaccagggcgacgtgacgcgcaagaccgaccctgacggc
aacgctactgactacagctacaacaaatatgggcagctggttggtgtctggtacccggat
cacagctgtcatcggctggtgtggaatgagcgtgggcagttgcttgaggagcagttgccg
aacggtggcattaagcgctaccgctatgacgaccttgggcggcaagttgcgcgtgaagat
gagcatggggcgctgacccagtatcaatgggatgcagcaggccgcttactgaaactgact
cagcccggcggtgccacacgggaatacagctacaacgcttacggaaaaatcacctccgaa
cgcgatgaactcggccacctcacccgctacgaatacgccgacggcctgcacctgatcagc
cgtcgcatcaacgctgatggcactcaggtcaaataccggtacgacaacgttaggttattg
ctgaccgagatcgaaaacgaggtgggcgaaacctaccgactccagtatcacgccaatggc
ctgatccaacaggaaacaggatttgacggccagcgcaccgcttacgtctatgacctcaac
ggcaacctgcaggagaagaccgaacacggcgatgacggcagtcagctggttacccgttac
gagcgtgaccatgccggtcgactcgtaagaaaaaccttgcccgacggcaaccaagtcgat
tacgcctacgaccgccaaggcaacctcttaagcgtcgaaaacggccactgggcgttggcc
tacgagtacgacagccaaaaccgcctcaccgccgaacaccaaggctggggcacgctgcgc
tatggctacgacgcctgcggccaactgcaaaacctgcgcctgccggacaacaaccgtctc
accttcaaccacgacaaaggcggccacctcgcgaccatcgaactgaacggtgaaagcctt
acctctcatctattcaaagccggccaggaactccaacgccaacaaggccaactgatcagc
cactaccactatgacgaccagcaacgcctgcacgcccacgccgtcacccagcaacaacac
accctttaccagcgccactacgactacgacaaggccggcaatctcacccgcctcctcgac
accctcaaaggcgagcatcactaccactacgacccgctaaaccgcctcacccgcgccgac
caggaacgcttcggccatgaccccgccagcaacctgctgatgcaagaccgccccggcccg
gacatcgtggcgggcaatcgcctgatgatccagggcgaccaccactacgactacgacgcc
ttcggcaaccttatccgcgaacgacgcggcaaaggccatcaactcgtcaccgaataccgc
tacgactgccagcaccgtctgatcggcattaaaaaacccaatggccagaccgccagctac
cgctatgacccgtttgggcggcgcatcagcaaaaccgttgacggcatcactacagagttt
ttctggcagggcgacacactgatcgccgagcaccacgcggatcgccaccgcagttacctc
tacgagccgaacacctttcgcccgctggtcctactggaaggtttcggtccaaaggaaacc
gagaactaccactaccaactcgaccacctgggtacgccgcgggaactcaccgcctccgat
ggcaaaatcgtctggtccgcgcactaccgcgcttacggtgaaatcacccgcctcgacatc
ggaaaagtcgacaacccgctgcgtttccagggccaatacttcgatgaagaaagcgggctg
cactacaaccgccatcgctactacaatccggataatggccgttacctgaccccggacccg
gtgaagctggcgggtgggatcaatgcgtaccagtacgtgaccaaccctacgggctgggtt
gatccactgggtttgagcacgtgtcccggcggggacggatgcaaaccacacacaaactca
gaaaacttaaataaacagctgaacgtagacgacggcactccttcgctaccagcatcaagt
aaaaaacaagaatatttatatcgaggggactcaaggcacccggacgaaatttttgaaaca
ggctttgagagcagaggaaaaagcactgacctatacttacactcgcaaaacaatgcgagt
ccaccaagcaattttgtgagcacatcgatatcaagggagcaagggttgacgttcgcaaca
tcctttgggtttgaggaaggctatctttacaccctaaagaaaatcccgggtcgggatgtc
aacaaagaactaggcattttatccgactataaaaaggagcgcgaaattgccataccaaac
cggatagataccaaggatattctaggagccacacccgtccacgatgatggaacgcataaa
ggctactcattcattaatccaaatagaaaatga
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integrated database retrieval system
