KEGG   Pseudomonas simiae PICF7: PFLUOLIPICF724460
Entry
PFLUOLIPICF724460 CDS       T03767                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pff  Pseudomonas simiae PICF7
Pathway
pff02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pff00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PFLUOLIPICF724460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pff03021]
    PFLUOLIPICF724460
Transcription machinery [BR:pff03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PFLUOLIPICF724460
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 GerE HTH_11 PhyR_sigma-like HTH_7 DUF6362 RovC_DNA-bd HTH_38 HTH_24 HTH_Tnp_4 HVO_A0261_N HTH_Tnp_ISL3 HTH_29 HTH_28 Xre-like-HTH Phage_terminase DUF8073_M TnsD HTH_40 HTH_36
Other DBs
NCBI-ProteinID: AJZ96188
LinkDB
Position
complement(5236747..5237265)
AA seq 172 aa
MNDVVVPTHAPELTLSSLYRDHRSWLESWLRRRLGNAWDAADLSQDTFLRVLASAQPIAQ
MQEPRAYLVTVGKRLLVNFHQRRSLEQAYLNALASLPEACVPSPEQRWLLLETLQALDEL
LDGLPVLVRRAFLWSQLEGLGYRDIAERLDVSERTVKRYMAQAYEHCLLVDL
NT seq 519 nt   +upstreamnt  +downstreamnt
atgaatgatgttgtagttccgacccacgcccccgaactgaccttgtcgagcctgtaccgc
gaccaccgcagctggctggaaagctggctgcgccggcgtctgggcaatgcctgggatgcg
gctgacctgagccaggataccttcttgcgtgtgctggccagcgctcagccgatcgcgcag
atgcaggagccgcgtgcctatctggtgacggtcggcaagcgcctgctggtgaatttccat
cagcggcgcagtcttgaacaggcttatctgaatgccttggccagcctgccggaagcctgc
gtgccgtcgcccgaacaacgctggctgctgctggaaaccttgcaagccctggatgaattg
ctcgatggcttgccggtgctggtccgccgtgcgttcctgtggagccaactggaaggcctg
ggctatcgggacatcgccgagcgcctggacgtgtcggagcgcacggtaaaacgctatatg
gcccaggcttacgaacattgcctgctggtggacctgtga

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