KEGG   Pseudomonas simiae PICF7: PFLUOLIPICF727205
Entry
PFLUOLIPICF727205 CDS       T03767                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pff  Pseudomonas simiae PICF7
Pathway
pff02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pff00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PFLUOLIPICF727205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pff03021]
    PFLUOLIPICF727205
Transcription machinery [BR:pff03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PFLUOLIPICF727205
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 PhyR_sigma-like HTH_11 HTH_DeoR HTH_20 HTH_IclR HTH_38 HTH_31 WSD GerE HTH_10 HTH_28 SpoIIID HTH_7 LacI
Other DBs
NCBI-ProteinID: AJZ96643
LinkDB
Position
5879474..5879989
AA seq 171 aa
MSSDHPLDHAAIGQLYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQP
RAYLSSIARSLMIDQYRRRELERAYLESLAHFPQIEVPSEETRLLILDSLERIDRLLDQL
KPRVREAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHACYRLRYVEN
NT seq 516 nt   +upstreamnt  +downstreamnt
atgtcgagcgatcacccactggaccatgccgccatcggccagctttaccatgcccatcat
gcctggctgcgcggctggttgagccgccgcaccggctgccgcgaacacgccgccgacctg
gcccaggaaaccttcgtgcgcctgcttaatgcgcgcaggcagcaaaccttgcagcagccg
cgcgcgtacttgagcagcatcgcccgcagcctgatgatcgaccaataccgccgccgcgaa
ctggagcgcgcctacctggaaagcctcgcgcacttcccgcaaatcgaggtgccgtcggaa
gaaacccgcctgttgatcctcgacagcctggaacgtatcgaccgtctgctcgaccagctc
aagccgcgcgtgcgcgaagcctttttgctggcgcaactggatggcctgacttgcgcacag
atcgccctgcgtctcggcgtgtccaaggccacggtggaacgggacctgtccaaggcgctg
cacgcgtgttaccggttgcgttatgtcgaaaactga

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