Pseudomonas simiae PICF7: PFLUOLIPICF728320
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Entry
PFLUOLIPICF728320 CDS
T03767
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pff
Pseudomonas simiae PICF7
Pathway
pff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFLUOLIPICF728320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pff03019
]
PFLUOLIPICF728320
03009 Ribosome biogenesis [BR:
pff03009
]
PFLUOLIPICF728320
Enzymes [BR:
pff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFLUOLIPICF728320
Messenger RNA biogenesis [BR:
pff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFLUOLIPICF728320
Ribosome biogenesis [BR:
pff03009
]
Prokaryotic type
rRNA helicases
PFLUOLIPICF728320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AJZ96840
LinkDB
All DBs
Position
complement(6107212..6108885)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgaccggctacgaagagccttcggcgattcagcagcaatcgatcccgatcatc
atggccggcaaggacatgatcggccaggcgcaaaccggtaccggcaaaaccgccgcgttc
gctttgcctatcctgcattgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccgggcgtaaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccacgccgggccgtctgtgcgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgccaccgacc
cgtcagaccgttctgttctcggccaccctgccgcagtcgatccgtgccattgccgagcgt
cacctgcgcgatccagagcacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactctctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgccgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccgcgcgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtccgcctgccggatgcccaagccgttctg
gatgctcgcatcaagaaactgaccaacagcctgtcgccactggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gctgcagccttgctgcgcaaggcgaccaatggtcaagccttgaccctggcagctatcgag
aaagaacgtccactggtgccgaacagcgcgccgcgcggtgatcgtccagagcgttccggc
gaccgtccagaccgtggtgatcgcgagcgtcgtgctccagtgccattggctgaaggccgt
gctcgttgccgtaccgcgctgggcgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaatgagggtggcctggcacgtgaagccatcggtcgcatccaggttcgtgac
agcttctccctggtggagctgccggaagacggtctggaaaaactgctggccaagctgaaa
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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