Pandoraea faecigallinarum: AB870_05965
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Entry
AB870_05965 CDS
T03972
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pfg
Pandoraea faecigallinarum
Pathway
pfg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AB870_05965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfg03400
]
AB870_05965
Enzymes [BR:
pfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AB870_05965
DNA repair and recombination proteins [BR:
pfg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AB870_05965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
SH3_13
NAT10_TcmA_helicase
SLFN-g3_helicase
Herpes_Helicase
AAA_22
CbiA
nSTAND3
DEAD
T2SSE
PhoH
AAA_25
Flavi_DEAD
AAA_28
TraI_hel_assoc_N
MukB
AAA_16
UvrD_C
TagF_N
Motif
Other DBs
NCBI-ProteinID:
AKM32572
UniProt:
A0A0H3WXY0
LinkDB
All DBs
Position
complement(4000561..4002480)
Genome browser
AA seq
639 aa
AA seq
DB search
MSVWRDALFASGLCAPASLARALAGEAQGDAFPLLLDDHDRLYLARYYGYEARLAAALAR
KLSTTQRLSDAPDSPAGSITAADRERLHRYFGDGVLLSPDGRREPNWQMAAAALALRRSL
VVLSGGPGTGKTTTVVGLLACLLERDANLRVALAAPTGKAAQRMQEALTARQYLPQAVRM
ALPEAAVTLHRLLGVLPESADQVGRRFRHHAGNPLPYDLIVVDEASMIDLSMATALLEAV
PDEARLILLGDKDQLAAVEAGAVFGELSAQRAFSEAMRAQLLTALAWPADDLPRSGPLAP
GASATPNVSTCARTARGLEDAVVWLERTYRFGAHSAIGRLASAIKTGRVIDARKEFAVGE
SALATSGEQRETRAVLAEGVSPDRVLLSEDGGIQLSSHNLNVLADGYGQYLEALAQAMQT
IEQLGDPAAAMSTDIAMVAQPVFAAFGQFRVLCATRGGRRGVEFLGAQLTALLARRAGVA
LGAGGGAWFAGRPVLVTQNEYALNLFNGDIGIALPLGPSGTLRVAFATPDGRYRLYSPAS
LPAHETAFAMTIHKSQGSEFERVAIVLPEQASRVLSRELVYTGVTRARREAWLFSPWPVI
ASAIARPTQRDGGLTDRLTEVLATMSAAPPDFPRPLRPR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
ctgtccgtctggcgcgatgcgcttttcgcgagcggactgtgcgcacccgccagcctcgca
cgtgccctcgcaggcgaagcacagggcgacgcgtttccattgttgctcgacgaccatgat
cgtctgtatctggcgcgctattacgggtacgaagcccgtttggccgccgcgctggcccgc
aagctctcgacgacgcaacgcctttccgacgcgccggattcccctgccgggtccattacc
gcggcggatcgggaacgcctgcatcgttacttcggcgacggtgtacttctctcgccggac
ggccggcgagagccgaactggcagatggccgctgcggcgttggcgcttcgacgctcgctg
gtcgttctcagcggtggtccgggaacgggcaagacgacgactgtcgtcggtctgctggca
tgcctgctggagcgcgacgccaaccttcgtgtcgcgctcgccgcccccacgggcaaggcg
gcacagcggatgcaggaggcgctcacggcgcgtcagtatctgccgcaagctgtgcgcatg
gcattgcccgaggcggcggtgacgttgcatcgcctgctgggcgtgttgcccgagtcggcc
gatcaggtcgggcggcgcttccgtcatcacgccggcaatcctttgccctacgacctgatc
gtcgtggacgaggcgtcgatgatcgacctgtcgatggcgacggcattgcttgaggcggtg
ccggacgaggcgcgcttgattctgctgggtgacaaggatcagttggccgccgtcgaagct
ggtgcggtattcggggaactgagtgcgcagcgggcattctccgaggcgatgcgcgcgcag
cttctgacggcgctggcgtggcccgcggacgatttgccgcgttcgggtccgctcgcgccg
ggcgcgtcggctacgccgaatgtgtcgacctgcgcacgcacggcgagaggactggaagac
gccgtcgtctggttggagcggacctatcgtttcggcgcgcattcggcgatcggacgactg
gcgagcgcgatcaagacgggcagggttatcgatgcccgcaaggagtttgccgttggcgag
agcgcgcttgcgacctccggcgagcaacgagaaacgcgtgccgtattggcagaaggcgta
tcacccgatcgagtgctgctcagcgaggatggtggcatccagttgtcgtcgcacaatctg
aatgtgcttgccgacgggtacggccaatacctggaagcgctcgcgcaggccatgcaaacc
atcgagcaactgggagatccggctgcggccatgtcgaccgacattgcaatggtcgcgcaa
ccggtgttcgccgctttcggtcagttccgggtgttgtgcgcgacgcgtggcgggcggcgg
ggcgttgagtttctgggtgcgcagttgacggcactgctggcgcgtcgcgcgggcgtggcg
ctgggcgcgggaggtggcgcgtggtttgcggggcgtcccgtgctggtcacgcagaacgaa
tatgcgctcaatctcttcaacggggatattggcatcgccttgccgcttgggccatcgggc
acgttacgcgttgcgtttgcgacgccggatggccgttaccgcctgtactcgccggcgagt
ttgcccgcccatgagaccgcgtttgccatgacgattcacaagtcgcagggttcggagttc
gagcgcgtcgccatcgttctgcccgaacaggcaagccgtgtgctgtcgcgcgagttggtc
tacaccggtgtgacgcgcgcgcgtcgtgaggcgtggctgttttcgccctggccggtgatc
gcgtcggccatcgcgcggccgacgcagcgcgatggaggcctgaccgaccggctgaccgag
gtgctggctacgatgtccgctgcgccgccggattttccgcggcctttgaggccgcgatag
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