Pandoraea faecigallinarum: AB870_05970
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Entry
AB870_05970 CDS
T03972
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pfg
Pandoraea faecigallinarum
Pathway
pfg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AB870_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfg03400
]
AB870_05970
Enzymes [BR:
pfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AB870_05970
DNA repair and recombination proteins [BR:
pfg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AB870_05970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AraC_binding
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOX47825
LinkDB
All DBs
Position
complement(4002738..4006628)
Genome browser
AA seq
1296 aa
AA seq
DB search
MTRLTDLDVFGCDLDGVCLIEASAGTGKTWNICALYVRLLLEKQLSVEQILVVTFTNAAT
AELRERIRARLSGLVAAMAPVFGDEDAASESGDDEDLPDFDPDASDDPLFNVMIAGLIER
GDMSAKAIRECLQRALRGFDQASIHTIHGFCQRALAEVPFAAGLPFAYELVPDDNGVRHD
LAVEFWRQVVEPMAAQDDSFAAWLVDRKRSPGTLTDQLARRLKKPMSELRWPEAVQSDAQ
ASADTALLATYSAACDCWETDAPVIAELMRRALPSYKKNIYNDTSLPQAVSAWQRYLGSR
DAGAPLAPKAELLTTTRLAKDIKKGETPPGHRFFEMADVLVRARADADERYAMQWLRILR
TWLTQAPEQLALRKRQLRVVSFDDLLGNIARALNQHPDLAQALRERYPCALIDEFQDTDP
LQFAIFSAVYGQTARAPATSAASPTSAHEGRGPMFMVGDPKQAIYSFRAADLHTYLAARE
NADAAYTLAVNQRSTPAIIEAGNRLFGAHDRAFVLDGLDYPPVRPGARRRPPLSDVRDVA
DFTVWWLPDEDEPLSKDEAQQACARATAAEVARLLAGASRDEVLVGDRPLAPGDIAVIVQ
THRQGALMKAMLAEHAVGSVELTQESVFASEEAETLLRVLRAVEAPGDVRALRAALATEL
FGLDATALYRMQTSEASDAEAIAWIERLQRYRQLWTDRGFSAMWRTLMRELGLAARLVAQ
PGGERRLTNFMHLAELAQARWAEQPGMPALLRWLASQRSASGGEETQLRLESDQNLVQIV
TVHKSKGLEYGVVFCPFLWDGAVRDTGGLEGLEYHDGATAVIDFTDAAGKGSPAAAALRQ
EQSAEQARLLYVALTRAVYRCYLAAGIYSSRRSVKEACGGMLNWLAAGQGISFDAWISST
VDTDERVGTIRNAWKALVGGPLDVVPLPVGDALDNDTRVVHDMPQDLAPRTSTRALREVW
RIGSFSGLLAGMHTGPQLGGGQLSAPERTRPDYDAQANAGPVFALPPEGDDTWPPAEDIL
RFPRGPAAGESLHRVFELADFQSRAQWPHAVARALRERPPGRGAEHNDTWRAMMMNMLAD
TLATPLRPGMHLADVALTERLTEMEFTYPADAVSLEALRGLLRQFGYPDLPLEATVLRGY
LKGFIDLVFRHGGQWWILDWKSNYLGTAPENYAADGLREAMAEHGYHLQYLLYTLALHRY
LQRRLPNYDYDRDMGGSLYLFVRGVRPDWASAHLAGDDVPGVFFDKPSREMVDALDGLFA
AGENAALAEALSLDGRGSTAAPAAGAGVADIGGEGA
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgacccggctcacggacctcgacgtttttgggtgcgacctcgatggcgtttgcctgatt
gaagcgtctgccggcaccggcaagacctggaatatctgcgcgctctatgtacgcctgctg
ctcgaaaagcaactgagcgtcgagcaaattctcgtggtgacctttacgaatgccgcgacg
gcagagttgcgcgagcgcattcgcgctcgcctgtcggggctggttgcggcaatggcgcct
gtctttggcgacgaagacgcggcgagcgaaagcggtgacgatgaagatctccccgacttc
gatcccgatgccagcgacgatccgttgttcaacgtgatgattgcgggcttgatcgagcgc
ggcgatatgtcggcgaaagccattcgcgagtgcctgcaaagggcgctgcgcggcttcgat
caggcttcgattcacacgattcacggcttctgccagcgcgcccttgccgaggtgccgttc
gcggccgggctgccgtttgcgtatgagctggtgcctgacgacaacggcgtgcgacacgat
ctggcggtggagttctggcgtcaggtggtggagccgatggcggcgcaggacgatagtttt
gccgcgtggctcgtggaccggaaacgttcgccgggcacgctcaccgatcagttggcgcga
cggttgaaaaagcccatgtccgagctgcgctggccggaagcggtccaaagtgatgcgcag
gcgtctgcggacaccgcgctgctcgccacctactcggcagcgtgcgactgctgggagacc
gacgcgccggtgattgccgagctcatgcgccgtgcgttgccgtcttacaaaaagaacatc
tacaacgacacgtcgctcccgcaggccgtgtcggcgtggcagcgatacctcggctcgcgc
gatgccggcgcgccgttggcgccgaaagcggagttgctgacgacgacgcgtctggccaaa
gacatcaaaaagggagaaacgccgcccggtcaccggttcttcgagatggcggatgtcctc
gtgcgtgcacgcgccgacgccgacgaacgttacgcgatgcagtggctacggattctgcgc
acatggttgacacaggcgccggaacaactggcgctacgcaaacgccaattgcgcgtggtg
tcgttcgacgatcttctcggcaatatcgcgcgcgcgctcaatcagcatcccgacctcgcg
caggcgctgcgcgagcgctatccctgcgcgctgatcgacgaattccaggataccgaccca
ctgcaattcgccattttcagcgcggtgtacggccagaccgcccgggcaccggcgacatcc
gcggcatcgccgacatctgcgcatgaggggcgcggcccgatgttcatggtgggcgacccg
aagcaggccatctacagctttcgcgctgccgaccttcatacctatctggcggcacgcgag
aacgccgacgcggcgtacacgcttgccgtcaatcagcgctccacgcccgccatcatcgaa
gcgggcaaccggctctttggcgcgcacgaccgtgccttcgtgctcgacggactcgactat
cctccggtgcgaccgggcgcacgccgacgtccgccgttatcggacgtgcgtgacgtggcg
gacttcacggtgtggtggctgcccgacgaagacgagccgctgtcgaaggacgaagcacag
caagcgtgcgcgcgtgcgacggccgcagaggtggctcgcttgctcgcaggcgcgtcgcgc
gacgaagtactcgtcggcgaccggccgctggcaccgggcgacattgcggtgatcgtccag
acgcaccggcagggcgcgctcatgaaggccatgctcgccgaacacgccgtgggcagcgtc
gagctgacgcaggaatcggtattcgcgagtgaggaagccgaaacgttgctgcgcgtgctg
cgggcagtggaagcgccgggggacgtgcgcgcccttcgagcggcgctcgcaacggagctt
ttcggactcgacgcaacggcgctatatcgcatgcagacgagtgaggcatccgatgcggaa
gcgatcgcctggatcgagcgtttgcaacgctatcgacagttgtggaccgaccgtggtttc
tcggcgatgtggcgcacgctcatgcgcgaactggggctggcggcacggttggtcgcgcag
cccgggggggagcggcgtctgacaaatttcatgcacctggccgagttggcgcaggcacgc
tgggccgaacaaccgggcatgccggcgttgctgcgctggctggcgtctcaacgcagcgcg
agcggaggcgaagagacgcaattgcggctcgagtcggaccagaatctggtgcagatcgtg
accgttcacaagtcgaaggggcttgagtatggcgtggtcttctgcccgttcctctgggac
ggtgcggtgcgggacaccggcgggctcgaaggccttgaatatcacgacggtgccactgcc
gtcatcgactttaccgatgctgcgggcaaaggatcgccagccgctgcggccttgcgtcag
gagcaatccgccgagcaggcacgtctgctgtatgtcgcactgacccgagcggtgtaccgg
tgctatctggcagcgggcatttattcgtctcgccgcagtgtgaaggaggcgtgcggcggc
atgctcaactggcttgccgccggtcaggggatctcgttcgacgcctggatttcgtcgaca
gtcgataccgacgagcgcgttgggacgattcgcaacgcgtggaaagcgctcgtcggcggc
ccgctcgacgtcgtgccgctgccggtcggcgacgcgctcgataacgacacgcgggtggtg
cacgacatgccgcaggaccttgcgccacgtacgagtacgcgcgccttgcgagaagtctgg
cgcatcggcagcttctcgggactgttggcgggtatgcataccggcccccaactaggtggg
gggcagttgagcgcgccggagcgaacgcgaccggactacgacgcgcaggccaatgccggg
ccggtattcgcattgccgccggaaggcgacgacacctggccccccgcggaggatattctg
cgattcccgcgtggcccggctgccggcgaaagtctgcaccgggtgttcgagcttgcggat
tttcagtcacgcgcacaatggccgcacgcggtagcgcgggcgttgcgcgaacgtccgccg
ggccgtggtgccgagcacaacgatacgtggcgcgccatgatgatgaacatgctggccgat
acgctcgccacgccgttgcgtcccggcatgcatctggctgacgtcgcgctgacggaacgg
ctgaccgaaatggagttcacgtatccggccgatgcggtgtcgctcgaagcattgcgcggg
ctgctccggcagttcggttaccccgacctgccgctcgaagcgacggtgctgcggggttac
ctcaaaggttttatcgatctggtgttccggcacggcggccaatggtggatcctcgactgg
aagtccaactatctgggtactgcccccgagaactatgccgcggacggtctgcgcgaggcg
atggccgagcatggctaccacttgcaatatttgctttacacgcttgcgctgcatcgctat
ttgcagcgccgtctaccgaactacgattacgaccgcgatatgggcggcagcctttacctc
ttcgtgcggggcgtacgtcccgattgggcgagtgcacatctggccggcgacgatgtgccg
ggcgtcttcttcgataagccgtcgcgggaaatggtcgatgcacttgacggcttgttcgcc
gcaggcgagaacgcggcgcttgccgaagcgctttcgctcgacggacgaggcagtacggcg
gcccccgcagcgggggcgggcgtggcggacatcggtggggagggcgcatga
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