Pandoraea faecigallinarum: AB870_07165
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Entry
AB870_07165 CDS
T03972
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfg
Pandoraea faecigallinarum
Pathway
pfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB870_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfg03019
]
AB870_07165
03009 Ribosome biogenesis [BR:
pfg03009
]
AB870_07165
Enzymes [BR:
pfg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB870_07165
Messenger RNA biogenesis [BR:
pfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB870_07165
Ribosome biogenesis [BR:
pfg03009
]
Prokaryotic type
rRNA processing factors
AB870_07165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKM29935
UniProt:
A0A0H3WQQ4
LinkDB
All DBs
Position
4260255..4263590
Genome browser
AA seq
1111 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWHAIEGAAHNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYALAEEAARSLEEDPAGYSKKKEDARPRQEAAVKGITP
EQPAPAAQPRPEPVAVAAPAAAAPANGGGFFGFIKRLFGIGAAAPAPVKAEEPAKPTARP
PRERHERPHQQNRNRRGNVRDDNKSGKDNAGQPAREGRDGRGARPERAERADRGERNSDR
NERNERGSDRNDRQEGRDKRERDDAQRQPSQDVRAEEGREPREGRERGSRRERGERRDRR
QTEGADAQQAAPQRVAQVATAPLNAGQEELDQDRLAAQAEGAPQVTGEEGEQGGEERRRS
RRRGRRGGRRERETGEQQVNADGEHVDIEAPEAVEGAEGARAPALSDKAAENVATDTLVH
AAAPAIPAPAGAPAVAAPVPAAQVEPTPAPVRAEPADATTAAAPVATVTEAAPAATPEVP
SRVVSEPVAQAPAAAPAPVAPANVAPLPAAQVASTPVVPPVSAPLPAAVQMPAQPTLPAE
ALTEIVATAATASAPAPVAQAPQASQPMEADQPAPAVEPPAPVETAPAAPVQASAAVPVA
PEAAAAVTEVVTHKAAPVAVTPTLERAALESTLASVGLVWVHTDADKHRAAREAAAQVAP
PPRVQRERRPSTPLNSGPMEQVETRSTNHVA
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggcaatcgtcgat
gggcagaaactcatcgacatcgatatcgagacggccggacgcgaacagcgtaaaggcaat
atctacaagggtgttatcacccgtatcgagccctctctcgaagcctgcttcgtcaactac
ggtgaaggccgccacggcttcctgccgttcaaggaagtcgcccgtgcgtacttccgcgaa
ggtgccgatgtgcgcaatgcgcgcattcaggacgccctgtccgaaggtcaggaactcatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgccgccctcacgacgttcatttcg
ctggccggccgctatctggtgctgatgccgaacaacccgcgcggcggcggtgtttcgcgt
cgtatcgaaggtgaagaccgtcaggaactgcgtgagacgatgggtcagctcgaactgccg
gaaggcatgagcatcatcgcccgtaccgccggcatcggccgctcggccgaagaactccag
tgggacctgaactacctgctgcaactgtggcacgccatcgaaggcgccgcccacaacatc
gaactgccgcgcgactcggccctgatctatctcgagtcgagcctcgtcattcgcgccatc
cgcgactacttccagccggacatcggtgaaatcctcatcgatacggaagaaatctccgaa
caagcacgcaacttcatgcaggtggtcatgcccgaccacctcaaccgcgtgaagcagtat
cgcgacgacgtgccgctgttctcccgtttccagatcgaacaccagatcgagacggcctac
tcgcgtcaggtgccgctgccctcgggcggcgcgatcgtgatcgatcacaccgaagcgctc
gtttccatcgacgtgaactcggcacgcgccaccaagggcgccgacatcgaagaaaccgcc
ctgcgcactaacctggaagccgcggacgaagtcgcgcgccagttgcgtttgcgtgacctc
ggcggcctgatcgtcatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggacgcgctcaagcacgaccgtgcacgcgtgcagatgggcaagatt
tcgcgtttcggcctgatggagctgtcgcgtcagcgcctgcgtccgtcgctgtccgaaggc
acgcacgtgacgtgcccgcgctgcaacggcaccggccacattcgcgacgccgaatcgtcg
gcgctgcaagtgctgcgcatcatccaggaagaggcgatgaaggagcacacggcagcgatc
cactgccaggtgccggttgaagtctctgcgttcctgctcaacgaaaagcgtcaggaaatc
aacaagatcgaagcccgcttcaaagttggcgtgctgctgatccccaacaagcacctcgaa
acaccgcattacaagctcgaacgtctgcgcttcgacgatccgcgcctggacgccccgaag
gccagctacgcgctcgccgaagaggctgcgcgttcgctggaagaagatcctgccggctac
agcaagaagaaagaagacgcacgcccgcgtcaggaagctgcggtcaagggcatcacgccg
gagcagccggcaccggcggcccagccgcgtccggaaccggtcgcagtcgcggccccggct
gctgccgcaccggcaaacgggggaggtttcttcggtttcatcaagcgcctgttcggcatc
ggcgctgccgcaccggcaccggtcaaggccgaagagccggccaagccgacggcccgcccg
ccgcgtgagcgccacgaacgcccgcatcagcagaaccgcaatcgccgtggcaatgtccgc
gacgacaacaagtccggcaaggacaacgccggccagccggcgcgcgagggccgcgatggc
cgtggtgcacggcctgaacgagctgaacgtgcagaccgtggcgagcgcaacagcgaccgc
aatgagcgtaacgagcgcggcagtgatcgcaacgaccgtcaggaaggccgcgacaaacgc
gagcgcgacgacgcgcagcgtcagccctcgcaggacgtacgcgccgaggaaggtcgcgaa
ccgcgcgaaggccgtgaacgtggcagccgccgcgaacgcggcgagcgccgagatcgtcgc
cagacggaaggcgccgacgctcagcaagccgcgccgcaacgcgtcgcacaggtggcaacg
gcaccgctgaacgccgggcaggaagagctcgatcaggatcgcctggctgctcaggccgaa
ggcgcgccgcaagtcacgggcgaggaaggcgagcaagggggcgaagagcgccgccgcagc
cgtcgtcgcggtcgtcgtggcggtcgtcgtgaacgcgaaaccggagagcagcaggtgaat
gccgacggcgaacacgtcgacatcgaggcgccggaagccgtggaaggtgcggaaggtgcg
cgcgcaccggcactgtcggacaaagccgccgagaatgttgcgaccgacacgctggtccac
gccgctgccccggccattccggcaccggcaggagcacccgcggttgccgcaccggttccc
gctgcgcaggttgagccgaccccggcccccgtccgtgccgaacctgcggacgccaccaca
gccgccgcaccggtcgccacggtgaccgaagccgccccggccgcaacgcccgaagtgccg
tctcgtgtcgtgtcggagcctgtggcacaagccccggcggccgcgcctgcgccggtcgcg
ccggccaacgtcgcgccgctgcccgccgcgcaagtcgcctcgacgccggtcgtacccccg
gttagcgcaccgctgcctgctgccgttcagatgccggcccaaccgacgttgcctgccgaa
gcgctgaccgagatcgtcgctacggccgcaacagccagcgcaccggcaccggttgcacaa
gcgccgcaggcctcgcagccgatggaagccgaccaaccggcgcccgccgtcgagccgcca
gcgccggtggagaccgcccccgcagcaccggttcaggcgagcgcggccgtgccggtcgca
cccgaagccgcagcggccgtgacggaagtcgtcacgcacaaggccgcaccggtcgccgtg
acgccgacgcttgagcgcgccgcgctggaatcgacgctggcaagcgtgggtctcgtctgg
gtccatacggacgccgacaagcaccgcgccgcccgggaagccgccgcgcaagtcgcgccg
cccccgcgcgtgcagcgtgaacgcaggccgtcgacgccgctcaacagcggcccgatggag
caggtggaaacgcgttcgacgaatcacgttgcgtga
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