Pandoraea faecigallinarum: AB870_20265
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Entry
AB870_20265 CDS
T03972
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfg
Pandoraea faecigallinarum
Pathway
pfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB870_20265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfg03021
]
AB870_20265
03019 Messenger RNA biogenesis [BR:
pfg03019
]
AB870_20265
Transcription machinery [BR:
pfg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AB870_20265
Messenger RNA biogenesis [BR:
pfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB870_20265
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AKM31939
UniProt:
A0A0H3WUN4
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All DBs
Position
complement(1953499..1954761)
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AA seq
420 aa
AA seq
DB search
MHLSELKSQHVSELLEMANGLEIENANRLRKQELMFAILKKRAKSGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GHPPEASKHKIMFENLTPLHPNKPLLLERDIRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAITANHPEAKLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV
QVAEMVIEKAKRLIEMKEDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKLIYDMDEAEAMEFLLGKIKQTKNNAEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaagtcccagcacgtctccgagctgctagaaatggcgaacggt
ctcgaaatcgagaacgcgaaccgccttcgcaagcaggagctgatgttcgccattctgaag
aagcgcgcaaagtccggcgaaaccatctttggcgacggtacgctcgaagtgctgccggat
ggcttcggtttcctgcgctcgcctgaaacgtcgtacctggccagcacggacgatatctat
atcagcccgtcgcagattcgccgtttcaacctgcataccggcgacacgatcgaaggggaa
gtgcgcacgccgaaggacggcgagcgttatttcgcgctggtgaaggtcgacaaagtcaac
ggtcatccgcccgaggcctcgaaacataagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgcttctggagcgcgacattcgcggtgaggaaaacgtgacgggccgc
atcatcgacatgatcgccccgatcggcaagggccagcgcggtctgctggtcgcctcgccg
aaatccggcaagaccgtgatgttgcagcatatcgcgcatgccatcacggccaaccacccg
gaagccaagctcttcgtgctgctcatcgacgagcgtccggaagaagtgacggaaatgcag
cgctcggtgcgcggcgaggtcatcgcatcgaccttcgacgaaccggccacgcgccacgtc
caggtcgccgaaatggtaatcgagaaggccaagcgcctgatcgaaatgaaagaagacgtg
gtgattctgctggactcgatcacacgtctggcccgcgcctacaacacggtgatcccggct
tcgggcaaggtgctcaccggcggtgtggacgccaacgccctgcaacgcccgaagcgcttc
ttcggcgcggcgcgcaacgtcgaggaaggcggctcgctcacgatcattgccacggcactg
atcgagaccggcagccgcatggacgacgtgatctacgaagaattcaagggcactggcaac
atggaagtgcacctggagcgccgtctcgcggagaagcgcgtctacccgtcgatcaacctg
aacaagtcgggcacgcgtcgcgaagaattgctcatcaagccggaaatcctccagaagatc
tgggtgctgcgcaaactcatctacgatatggacgaagccgaagcgatggaattcctgctt
ggcaagatcaagcagacgaagaacaacgccgagttcttcgacctgatgcgccgcggcggc
tga
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