Plasmodium falciparum HB3: PFHG_05334
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Entry
PFHG_05334 CDS
T01052
Name
(GenBank) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfh
Plasmodium falciparum HB3
Pathway
pfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFHG_05334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfh03019
]
PFHG_05334
03041 Spliceosome [BR:
pfh03041
]
PFHG_05334
03009 Ribosome biogenesis [BR:
pfh03009
]
PFHG_05334
03016 Transfer RNA biogenesis [BR:
pfh03016
]
PFHG_05334
Enzymes [BR:
pfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFHG_05334
Messenger RNA biogenesis [BR:
pfh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PFHG_05334
Spliceosome [BR:
pfh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PFHG_05334
Complex C
U4/U6.U5 tri-SnRNP related factors
PFHG_05334
Ribosome biogenesis [BR:
pfh03009
]
Eukaryotic type
Pre-60S particles
Helicases
PFHG_05334
Transfer RNA biogenesis [BR:
pfh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PFHG_05334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-ProteinID:
KOB63961
UniProt:
A0A0L7KLJ9
LinkDB
All DBs
AA seq
1350 aa
AA seq
DB search
MSNNIDDLFDVFEENEIPEIISIKDEEQQQEKKNHIIQNDNEIITSTDNSKNEDEEEKEE
TEKNINKQNNNINNIDKDDVNKDNVGNHKKENLYKDINIENYKINVEYLIKNKKAEENIK
KQIQEEIYSDIQNFDKTNKNVNKIRKLSLQENNNINNNHINGKNINNNINEDNLTGETYP
NDYSIPQENNKITNKLIVEETIIENSKTINNDDVLVLEEFGGDVNCIHKCVRPQSYVHNE
IKEPLIPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRV
IYTSPIKALSNQKYRDLGEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRGSSLTKE
VKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACH
IVYTDYRPTPLQHYIYPTSSESVFLICDENKDFKKDNFIKAVNVIKEKMNTSEENHHQQH
INKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSDTEKEV
IKELYENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVL
FSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSGEYIQMAGRAGRRGLDDRGIVIIML
DTPLHWREAHKLFVGEANRLVSQFHLGYNMILNLLRIEGITPEFMIERSFIQYQMKKNLS
QKILAKKKVEEHIKQIFNHLTNIHLDENNNEITKDELLTKIMYNNYEQIKNNQNLGTSSE
LKIKDTSSNDEVILNADKHKEIKEEFKEEYTNYSSYSTQHYNENVINKELLNYSTIFSCI
SNFYTMKQKLIDVGETYRYILTMKKHITPYLSLGRLLYIIQEDLRWGWCICIEGQLIEHK
KANDNQKNKHNNSNNNNNNNHSGDHNNLKQAKSEQETLFVECLVPCNHNMKRKLTINDDD
DDNINHNNNNYGEEYQPASDRSKARWKVISFNIKCVYQLSAVVLSIDKPFDKKNEEQIEN
IKTKYNTMVTCLKGEKNIPVINPNQMGIKNETFISIVKNLKFHENIINKNKLLNNKNLNK
YYQMYSKYVALQCEKNILESNIEKCRFIVLKKELKNMLVLLESLNYIEVSYNLENLKNEK
DIKTIENSITEHIKNERIMNIKNETYKNNHEEKNYVVTMKGQIASAILSVDELVISELFF
SNFFSKYNYDYICAFLSCFVYDESTSKEITINDPILVEGYQQIIKTANHVATKMNECGMN
INLKDYIDKFKSAIMPIALLWARGHSFVEILSDSQIYEGSIIRTLRRLDELIRQMICAFR
GINNDSMCETLTLATNKLRRGIPFSPSLYL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaatattgatgatttatttgacgtttttgaagaaaatgaaataccagaaatt
atttcaataaaagatgaagaacaacaacaagaaaaaaaaaaccatatcatacaaaatgac
aacgaaattataacttcaactgataatagtaaaaatgaagacgaagaagaaaaagaagaa
acagaaaaaaatataaataaacaaaacaacaatattaacaatatagataaagatgatgta
aataaagataatgtaggaaatcataaaaaggaaaatctatacaaagatataaatattgaa
aattataaaattaatgtagaatatttaattaagaataaaaaagccgaagaaaatataaaa
aaacaaatacaagaagaaatatatagtgatatacaaaattttgataaaacaaataaaaat
gtaaacaaaataaggaaattatcccttcaagaaaataataatataaataataatcatata
aacggaaaaaatattaataataatattaatgaagataatctaacgggggaaacataccca
aacgattatagtatccctcaagaaaataataaaataacaaataaattaattgtagaagaa
acgataattgaaaatagtaagactataaataatgatgatgttctagtattagaagaattt
ggaggggatgttaattgtattcataaatgtgttagacctcaaagttatgtacacaatgaa
attaaagaacctttaattccagctaggacatataaatttgaattagatacttttcaaaaa
aaatctatagaatgtctagaaagaaatgaaagtgtattagtatcagctcatacttcagca
ggaaaaaccgtaatagcagaatatgccattgctttaggacttcgagataaacaaagagtt
atttatactagtccaattaaagccttaagtaatcaaaaatatagagatttaggtgaagaa
tttaaagatgtagggctaataacaggagatatttctattaaccctgaagcctcaattatt
gttatgacaaccgaaattttaagatcaatgttatatcgtggttcctctttaacaaaagaa
gtgaaatgggttatatttgatgaaatacattatatgagagatagagatagaggtgttatc
tgggaagaaactattattcttttacctttaatggttagattcatttttttaagtgcaacc
atacctaacggtattcaatttgctgaatgggtaagtagcattaaaagtcaagcttgtcat
attgtatacacagactatcgacctacacctttacaacattatatatatccaacatctagt
gaaagtgtatttttaatatgtgatgaaaataaagattttaaaaaagataatttcataaag
gctgtgaatgtaattaaagaaaaaatgaacacatcagaagagaatcatcaccaacaacat
ataaataaatatacaaaaaaaatgagaaaaacaacatatgatatagaaaaaattgttcaa
atgtgtcattctagaaattatacacctttaattatttttgcattttctaaaaaagaatgt
gaagttaatgcgacagctatgcataaaattgatttaaccagtgatacagaaaaagaagtt
ataaaagaattatatgaaaatgctatacgcatattagcagatgatgatagatcccttcca
caagttcaatttattttacctttacttttaagaggtataggtatacatcatggtgggctg
ttacctataattaaagaaatcatagaaattatgtttcaagaatcattattaaaagtgtta
tttagtactgaaacattttctatgggtattaatatgccagcaaaaacagttgtatttaca
tcattaacaaaatttgatggattagaaaaaagattaataacatcaggagaatatattcaa
atggcaggaagagcaggaagaagaggattagatgatagaggtattgttattattatgtta
gatacacctttacattggagagaagctcataaattatttgttggagaagctaatagatta
gttagtcaatttcatctaggttataatatgatcttaaatttattacgaattgaaggcatt
actcctgaattcatgattgaaagatcgtttatacaatatcaaatgaaaaaaaacctttct
caaaaaatactagccaaaaaaaaagtagaagaacatattaaacaaatttttaatcattta
acaaatattcatttagacgaaaataataatgaaattactaaagatgagttacttacaaaa
attatgtataataattatgagcaaattaaaaataatcaaaacttaggtacttcttcagaa
ttgaaaattaaagatacctcttctaatgatgaagttatcttaaatgcagataaacacaaa
gaaataaaagaagaatttaaagaagaatatacaaactattcatcatacagcacacaacat
tataatgaaaacgttattaataaagaattattaaattatagcactatcttttcttgtata
tctaatttttacaccatgaaacaaaaattaatagatgtaggagaaacatatcgatacata
ttaacaatgaaaaaacatataaccccatatttatctctaggtagactattgtatataatt
caggaggatttacgttggggctggtgcatatgtatagaaggtcaacttattgaacataag
aaagcaaatgacaaccaaaaaaataaacacaacaacagcaacaataataataataataac
cattctggtgatcataataatttaaaacaagctaagagcgaacaagaaacattatttgtt
gaatgtcttgtgccttgtaatcataatatgaaaagaaaactaaccataaatgatgatgac
gatgataatataaatcataataataataattatggtgaagaataccaaccagcaagtgat
agatcaaaagccagatggaaagttatatcctttaatattaaatgcgtttatcaattatct
gctgttgtcctaagtatagataaaccatttgataaaaagaatgaagaacaaattgaaaat
attaaaaccaaatataatactatggtaacttgcttaaaaggagaaaaaaatattccagtt
ataaatcctaatcaaatgggaataaaaaatgaaacttttatttcgattgtaaaaaattta
aaatttcatgaaaatattataaataaaaataaactattaaataataaaaacttgaacaaa
tattaccaaatgtatagtaaatatgtagctctacaatgtgaaaaaaatatattagaaagt
aatatagaaaaatgtagatttatagttctcaaaaaagaactgaaaaatatgctagtactt
ttagaaagcttaaattatattgaagtatcatataatttagaaaatcttaaaaatgaaaaa
gatataaaaactattgaaaattcaataacagaacatataaaaaatgaacgaattatgaat
attaaaaatgaaacatacaaaaataatcatgaagaaaaaaattatgttgttactatgaaa
ggacaaatagcaagtgcaattttaagtgtagatgaactagtaatatcagaattatttttt
tcaaatttttttagtaaatataattatgattatatatgtgcattcttatcatgttttgta
tatgatgaatccacaagtaaagaaatcacaattaatgatccaatattagtagaaggatat
cagcaaattattaaaacagcaaatcatgtagcaacgaaaatgaatgaatgtggaatgaac
ataaatctaaaggattatatcgacaaatttaaatcagcaattatgcccatagctttatta
tgggcacgtggacactcatttgttgaaatattgtcagattcgcaaatatatgaagggtct
ataataagaaccctaagacgattagatgaacttataaggcaaatgatttgtgcatttaga
ggtattaataatgatagcatgtgtgaaacattaacattagccactaataaattaagacgt
ggtatacctttttccccatctctatatttataa
DBGET
integrated database retrieval system
