Pyrococcus furiosus COM1: PFC_03885
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Entry
PFC_03885 CDS
T02183
Name
(GenBank) DNA repair helicase rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pfi
Pyrococcus furiosus COM1
Pathway
pfi03022
Basal transcription factors
pfi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PFC_03885
09124 Replication and repair
03420 Nucleotide excision repair
PFC_03885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfi03021
]
PFC_03885
03036 Chromosome and associated proteins [BR:
pfi03036
]
PFC_03885
03400 DNA repair and recombination proteins [BR:
pfi03400
]
PFC_03885
Enzymes [BR:
pfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PFC_03885
Transcription machinery [BR:
pfi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PFC_03885
Chromosome and associated proteins [BR:
pfi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PFC_03885
DNA repair and recombination proteins [BR:
pfi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PFC_03885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
Helicase_C_2
DEAD_2
ResIII
DEAD
AAA_30
AAA_35
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-ProteinID:
AFN03726
UniProt:
I6UPJ2
LinkDB
All DBs
Position
complement(697445..699388)
Genome browser
AA seq
647 aa
AA seq
DB search
MEELQYFPYERLRPNQREFIEIVKEAVKRGENLIVEAPTGFGKTISVLAGVLPYAISLGY
KVVYLARTHKQMDRVIEELKKIRERNEVSGIEFRSRRDLCLHSYIQTFVQDAYTSMIVCK
TLRKLGKCPFFENIKEKRDRVEEIVRFFLNSPPFPHEVLEYSELLELCPYEITKKIGEKA
NVIVASYLYMISPPIRQAFLENLGVDYSDLIVIFDEAHNLPDQAISALSDRLSIRSIERA
IKEAEEYGEKDIENFLSILLRGLEILYKEKLENYESEEVPIRPEEVFLHVASVLGWSGRE
IGMMLEDMIEVGDAIREDRIERNLPPRSYVGRVGEFLWNWLALREREDYLHLFTKERGLA
LELVALDPSVALEFLEEVHSAIFMSGTLSPLEAFRDIIGVKAELKKFPRMIKRENAIVLV
ARDVSTRGIERSPSLYRRISEYIFEAVRNTPKNVGVFTASYEVLEGILSTNVHIKIEEEI
GKKVFIEKRDAPSRENDEMIRAFKEESKGKGAVLFGVMGGRNSEGQDYSGDEMNGVVLVG
IPYARPTPRVQAQIRYFEKKFPGKGRYYGYVLPAHRKLTQAAGRVHRSEEEKGSIVILDY
RVLWKSVKKDLPDWMVETMIPVTLPTMRIKLRRFWRDRLNEMGQKME
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctacagtactttccctacgagaggttaaggccaaatcagcgagaatttata
gaaattgtgaaagaagctgtaaaaagaggggaaaaccttattgttgaagctcccactgga
tttggaaaaactataagcgttttagctggagtccttccctatgcaatctctttaggctat
aaagttgtgtacctggctagaactcataagcagatggatagagtaatagaggagctcaaa
aaaattagggaaaggaatgaagttagcggaattgaattcaggagtagaagggacttatgt
cttcactcctacatccaaacatttgtccaagatgcctacactagtatgatagtctgtaaa
accctaagaaaattgggaaagtgcccattctttgaaaatataaaagagaaaagagacaga
gtggaggagatagtgagatttttcctgaactctcctccttttccccatgaggttctcgaa
tacagcgaattacttgagctctgcccctacgaaattacgaagaaaattggagagaaagct
aatgttattgtagcgagctacctgtatatgataagccctccaataaggcaggctttctta
gaaaacttaggtgtggattactcagatttgatagttatatttgacgaggctcacaactta
cctgaccaagcaatttctgcacttagtgataggctaagcataaggagcatagagagggcc
attaaggaggccgaagagtacggagaaaaggacattgagaatttcctctcaatactccta
aggggattggagattctatacaaagaaaagctggaaaattatgaaagtgaagaagtcccg
ataaggccagaagaagtgtttcttcacgtagcttccgttttgggatggagtggaagggaa
atcggcatgatgttggaagatatgattgaagttggagatgcaattagggaggatagaata
gagagaaacctcccccctagaagctatgttggaagggtgggagagtttctgtggaattgg
cttgcccttcgagagagggaagattaccttcacctctttacaaaagagagaggacttgcg
ttggagttagtagcattagatccctcagtagccctcgaattccttgaagaggttcactct
gcaatattcatgtccggaactcttagccctttggaggcatttagagatataataggagtt
aaagcagagttaaagaagtttcccaggatgataaagagagaaaatgcaatagttcttgtg
gcgagagacgtgtctacaagggggatagagagaagcccatccctttatagaagaatttcg
gaatacatatttgaggcagtaagaaataccccaaaaaatgttggagttttcacagcttcc
tatgaagttcttgaaggaattctaagcaccaatgtccacataaaaattgaagaagagata
gggaaaaaggtctttatagagaagagagatgcaccgtcaagagagaatgacgaaatgata
agagcattcaaagaagaatccaaagggaagggagcagtattatttggcgttatgggggga
aggaacagtgaagggcaagactactccggagatgaaatgaacggtgttgtcttagttggg
ataccctatgcaaggcccacacctagagtccaggcccaaattagatactttgagaagaaa
ttcccagggaaggggaggtattatgggtacgttttgccagcccacagaaagctcacccaa
gctgcggggagagttcataggtctgaagaggagaagggaagcatagtcattttagactat
agagttttatggaaaagtgttaagaaagatcttcctgactggatggttgagacaatgatt
cctgtaaccctccccactatgagaataaaacttaggagattttggagggacaggttaaat
gaaatgggacaaaaaatggaatga
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