Pyrococcus furiosus COM1: PFC_07065
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Entry
PFC_07065 CDS
T02183
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
pfi
Pyrococcus furiosus COM1
Pathway
pfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFC_07065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfi03019
]
PFC_07065
Messenger RNA biogenesis [BR:
pfi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PFC_07065
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PFC_07065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AFN04349
UniProt:
I6TXZ5
LinkDB
All DBs
Position
complement(1262756..1263589)
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AA seq
277 aa
AA seq
DB search
MSNDEIVAGIMRDYILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVL
VGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRAL
NLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEI
LEEKEPLPVEKIPIPVTFAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSEGG
AFKLEEVMYAVETAFKKAEEIRKIILNALEKANNSEE
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaatgacgagattgttgctggaataatgagggattatattctaaatctccttaaa
gagaaaaaaagaattgatgatagaggatttgaagattataggcctatagaagttgaagtt
ggagtaatagagaaggcagaaggatccgcacttgtgaaacttggaaatactcaagtttta
gttgggataaaggcaacgctcggagagcctttcccagataccccaaacatgggtgtcatg
acaactaacgtggagctagtacctcttgcctctccaacatttgagcctgggcctcctgat
gaaagggcaattgaacttgcaagagttattgacagagggataagggaaagcagagcattg
aatttggagaaaatggttatagctccgggcaagattgtgagagtcgtctttatcgatgtc
catgtcctagaccacgacggcaaccttatggatgccattggaatcggagctatagctgct
ttgttaaatgcaagagttccaaaagttttgtataatgaagaaactggagaagttgagatc
cttgaggagaaagagcccttgcctgtagaaaaaataccaattccagtgacctttgctaag
attggaaactacttggttgttgatccaactttagaggaagagcagattatggatggcaga
cttacaataaccactgacgaaacaggccacatatctgcagtccaaaaaagcgagggagga
gcctttaaattagaggaagttatgtatgctgttgaaacagctttcaaaaaggccgaagag
atcagaaaaataatattaaatgctctagagaaggcaaataactctgaggaataa
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