Pyrococcus furiosus COM1: PFC_10530
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Entry
PFC_10530 CDS
T02183
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pfi
Pyrococcus furiosus COM1
Brite
KEGG Orthology (KO) [BR:
pfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfi03016
]
PFC_10530
Enzymes [BR:
pfi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PFC_10530
Transfer RNA biogenesis [BR:
pfi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PFC_10530
Prokaryotic type
tRNA splicing ligases
PFC_10530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
AFN05025
UniProt:
I6V1V9
LinkDB
All DBs
Position
1896790..1899678
Genome browser
AA seq
962 aa
AA seq
DB search
MAVPLKRIDKIRWEIPKFDKRMKVPGRVYADDVLIEKMRQDRTLEQAANVAMLPGIYKYS
IVMPDGHQGYGFPIGGVAAFDIKEGVISPGGIGYDINCLAPGTKVLTEHGYWLKIEEMPE
KFKLQRLRLYNIEEGHNDFSRVAFVAERNIEKDETAIRIVTETGTLIEGSEDHPVLTPQG
YVYLKNIKEGDYVIVYPFEGVPYEEKKGIIIDESAFEGEDPQVIKFLKERNLLPLRWEDP
KIGTLARILGFALGDGHLGEMGGRLVLAFYGREETLRELKKDLESLGIKANLYVREKNYR
IKTESGEYSGKTVLAELRVSSRSFALLLEKLGMPRGEKTKKAYRIPVWIMEAPLWVKRNF
LAGFFGADGSIVEFKGTTPLPIHLTQAKDVALEENLKEFLYDISRILEEFGVKTTIYKVN
SKKSVTYRLSIVGEENIRNFLGKINYEYDPKKKAKGLIAYAYLKFKESVKKERRKAMEIS
KKIYEETGNIDRAYKAVKDIVNRRFVERTIYEGERNPRVPKNFLTFEEFAKERGYEGGFV
AEKVVKVERIKPEYDRFYDIGVYHEAHNFIANGIVVHNCGVRLIRTNLTEKDVRPKIKQL
VDTLFKNVPSGVGSQGKVRLHWTQIDDVLVDGAKWAVDQGYGWERDLERLEEGGRMEGAD
PDAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEEIAKAYGLFEGQVVVMVHTGSRG
LGHQVASDYLRIMERAIRKYGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMI
THWVRESFQEVFRQDPEGDLGMEIVYDVAHNIGKVEEHEVDGKKVKVIVHRKGATRAFPP
GHEAIPKIYRDVGQPVLIPGSMGTASYVLAGTEGAMAETFGSTCHGAGRVLSRAAATRXY
RGDRIRDELLRRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVA
KG
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtggcagtacccctaaagaggattgacaaaatcagatgggaaattccaaagttcgataag
cgaatgaaagtgcccggtagagtctatgcagatgatgtattgattgaaaagatgaggcag
gacaggacattagagcaagctgcaaatgttgcaatgcttcctgggatatataagtactct
atcgtaatgccagacggtcatcagggttatgggttcccaattggtggtgtagcggccttc
gatattaaagaaggagtcataagccctggaggaatcggctacgacattaactgtcttgct
ccagggactaaagtcctaacagagcatggttattggctaaaaatcgaggagatgcctgaa
aagttcaagcttcagaggctgaggctttataatatcgaggaagggcacaacgacttctct
agagtagcctttgttgctgaaaggaacattgaaaaggatgaaacggcaataaggatagtt
actgagactgggacattaatagagggaagtgaagatcaccccgttcttactcctcagggt
tatgtctatctcaagaacattaaagaaggagactatgttatagtgtatccctttgaggga
gtcccatacgaagaaaagaagggaatcataatagacgaaagcgcttttgaaggtgaagat
ccacaggtgataaagttccttaaagaaagaaacctcctaccacttcgctgggaagatcca
aagatcggaactcttgcaaggattcttggttttgccctgggagatggtcatctaggagag
atggggggtaggttagtcttagcattctatggaagagaggaaacacttagagaacttaag
aaagatcttgaatcactaggtattaaagcaaatctctatgtccgagaaaagaactacagg
ataaagactgaaagtggtgaatatagtggcaaaactgttttagctgagttaagagtttcc
tcaagaagttttgctctcttacttgaaaaactaggaatgcctcgtggtgagaaaactaag
aaggcttatcgcattccagtttggataatggaagctcctctctgggtaaaaagaaacttc
ttggctggattctttggtgcagatggtagcattgttgaatttaaaggcactacaccactt
ccaatacacttaacccaggctaaagacgtagcacttgaagaaaatctaaaagagttctta
tatgatatttcaagaatccttgaggagtttggagtaaagactacgatttacaaagttaat
tcaaagaaaagtgtcacttatcgcctgtctattgtaggagaggagaacatcagaaacttc
ctgggtaaaattaactatgagtatgatcccaagaagaaagcaaagggtcttattgcctat
gcttaccttaagttcaaggagagtgtgaaaaaagagagaagaaaagcaatggagatatcc
aagaagatatatgaagaaactggaaacatagatagagcatataaggccgtcaaggacata
gttaatagacgctttgttgagaggacaatttatgaaggggaaagaaatccaagagttcca
aagaactttctaacttttgaggagtttgcaaaagagagaggatatgaaggaggctttgtt
gcagaaaaggtcgttaaagttgaacgcataaagccagaatacgatcggttctatgatatc
ggagtttaccatgaggctcataatttcatagcaaatgggatagttgtccacaactgtggg
gtgaggttaattagaacaaatcttacagagaaagacgtaaggccaaagataaaacagtta
gttgacactttatttaagaatgttccctccggcgttggtagtcagggtaaggtcaggctt
cactggactcagattgatgacgtcttagttgatggagcaaagtgggcggttgatcaagga
tatggatgggagagggatcttgagagattggaagaaggagggagaatggaaggagctgac
ccagatgcagttagccagagggctaagcaaagaggagctcctcagcttggctcattaggt
tctggaaaccacttccttgaggttcaagttgtggataagatattcgatgaggagatagcg
aaagcctatggattgtttgaaggacaagttgttgtgatggttcatactggatcaagagga
ttaggccatcaagttgcaagtgattacctgagaataatggagagagccataagaaagtac
ggcataccttggccggacagagagttggttagcgttccattccaaagtgaagaaggacag
aggtacttctcagctatgaaagctgctgcaaactttgcctgggcaaacaggcagatgatt
actcactgggttagggagagctttcaggaggtgttcagacaggatccagagggagacttg
ggaatggaaattgtatacgatgtagctcacaacataggtaaagtagaggagcatgaagta
gatggaaagaaagttaaggttatagtccacagaaaaggtgctacaagggctttcccacct
gggcatgaggccattccgaagatttatagagatgtaggacaaccagttctaattccaggt
tcaatgggaactgcaagctatgttctggctggaactgagggagctatggctgagactttt
ggaagcacatgtcacggagctggaagagttcttagtagggctgcggcaacaaggcamtat
aggggagatagaataagagatgaactactaaggagaggaatttacgtgagggcggcaagt
atgagggtggttgcagaagaggctccaggtgcgtacaagaatgtagacaatgtagttaag
gttgtaagtgaggcaggaatagcgaagctagtggcaagaatgaggccaataggagtggca
aaaggatga
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