KEGG   Pandoraea fibrosis: PI93_002435
Entry
PI93_002435       CDS       T06385                                 
Name
(GenBank) FAD-dependent oxidoreductase
  KO
K00273  D-amino-acid oxidase [EC:1.4.3.3]
Organism
pfib  Pandoraea fibrosis
Pathway
pfib00260  Glycine, serine and threonine metabolism
pfib00311  Penicillin and cephalosporin biosynthesis
pfib00330  Arginine and proline metabolism
pfib00470  D-Amino acid metabolism
pfib01100  Metabolic pathways
pfib01110  Biosynthesis of secondary metabolites
pfib04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:pfib00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    PI93_002435
   00330 Arginine and proline metabolism
    PI93_002435
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    PI93_002435
  09110 Biosynthesis of other secondary metabolites
   00311 Penicillin and cephalosporin biosynthesis
    PI93_002435
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    PI93_002435
Enzymes [BR:pfib01000]
 1. Oxidoreductases
  1.4  Acting on the CH-NH2 group of donors
   1.4.3  With oxygen as acceptor
    1.4.3.3  D-amino-acid oxidase
     PI93_002435
SSDB
Motif
Pfam: DAO FAD_binding_2 Pyr_redox_2 NAD_binding_8 Pyr_redox HI0933_like GIDA 3HCDH_N AlaDh_PNT_C Thi4
Other DBs
NCBI-ProteinID: QHF11632
LinkDB
Position
555878..556834
AA seq 318 aa
MTRQRIIVLGAGVSGLTTATTMAMAGCDVTIRAAEGPAQTTSALAAAIWHPFYQAPDFVY
LERARQTYTTMHRLSADTSSGVLMRTLTEYFQQDAGMPWWAECASDLKRLPDAEVPSRFA
CAYRMSVPVADTAAYLRYLMHMFFELGGQFLPQRIDDPASLLDDADYVVNCCGYGSRQFG
DGELSLSRAIVLRARRAAAVRGCFIDDADPAAPTYIVERSHDIVLGGTADPELTSTVIGV
RQIEDIVRRCTQLCEGVAALHVIDARTGFRPMRRVARVACDERHSRLIHNYGHGGGGFTL
SWGCANDVLRLAGMTPAN
NT seq 957 nt   +upstreamnt  +downstreamnt
gtgacgcggcaacgcatcatcgtgcttggcgctggggtcagcggactgacgaccgccacg
acgatggcaatggccggatgcgacgtcaccatccgcgcggcggaaggacctgcgcagacg
acgtcggccctcgccgctgccatctggcatccgttctatcaggcgcctgacttcgtttat
ctcgaacgcgcccggcagacttacacgacgatgcatcgcttgtctgccgacacgtcgtcg
ggcgttctcatgcgaacgctcaccgagtactttcaacaggacgccggaatgccttggtgg
gcggagtgcgcgagcgacctcaagagactgccggacgcggaggttccgtcgcgctttgcc
tgtgcgtatcgcatgtctgttcccgtcgccgacacggcagcttaccttcgctatctgatg
catatgttctttgagcttggcggacagttcttgccgcaacgtatcgatgatccggcctca
ctcctcgacgatgccgactacgtggtgaattgctgcggttacggcagccggcagttcggc
gacggcgagttgtcgttgtcgcgggcgatcgtgttgcgtgcccggcgcgccgctgctgta
cggggctgcttcatcgatgacgctgatccggcagcgcccacttacatcgtggagcgaagc
cacgacatcgtcctcggcggcaccgccgacccggaactgacatcgaccgtcattggggtg
cgacaaatcgaggacatcgtgcgccgttgcacgcaactctgcgaaggggtggctgcgttg
cacgtgatcgatgctcgcaccggatttcggccaatgcgtcgtgtcgcccgcgtcgcatgc
gacgagcggcactctcggctgattcataactacggtcacggtggcgggggtttcacgctg
tcatggggctgcgccaacgacgtgttgcgtctggcgggcatgacaccggccaattaa

KEGG   Pandoraea fibrosis: PI93_002970
Entry
PI93_002970       CDS       T06385                                 
Name
(GenBank) aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
  KO
K05825  2-aminoadipate transaminase [EC:2.6.1.-]
Organism
pfib  Pandoraea fibrosis
Pathway
pfib00300  Lysine biosynthesis
pfib00630  Glyoxylate and dicarboxylate metabolism
pfib01100  Metabolic pathways
pfib01110  Biosynthesis of secondary metabolites
pfib01210  2-Oxocarboxylic acid metabolism
Brite
KEGG Orthology (KO) [BR:pfib00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    PI93_002970
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    PI93_002970
SSDB
Motif
Pfam: Aminotran_1_2 Asp_aminotransf DegT_DnrJ_EryC1
Other DBs
NCBI-ProteinID: QHF11727
LinkDB
Position
complement(674871..676076)
AA seq 401 aa
MYAFTSPFANPAGSPIRELFKYLSEPGMISFAGGYPASDLFDVDGLAAAQARAFSQPTRC
LQYGPTDGLAELKAQLISLMASRGAPCAAEEMLVTTGSQQGLDLLLRVMVAPGDVVVTEQ
PAYPATLQALRLQQAKIVTVPVDAEGLNVDHLSALLREGKIAVPKLLYTVPTFANPTGAT
LSRERRIALLKLAVEYRFVVVEDDPYGDLRFAGDAVPTLLGLTAEVPGSRDWMVHFSSLS
KIVAPGLRVGWTVAPPEITRRCVVAKQTVDLCSVPWTQAVAAEYLADGALTRHLPKITDA
YRLKCDAMCAALRDKLGDAIQFHAPQGGMFVWARLAAVKTSELLPHAIAEKVLFVPGTAF
FAEHADEASLRLSFAAPAVTVIEEGVARLACAMRATGQPAK
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgtacgcattcacttctccgttcgccaatccggcaggctcgccgattcgcgaactgttc
aaatacctgtccgagccgggcatgatctcgttcgccggcgggtatccggcgagcgatctg
ttcgacgtcgacgggctcgccgcggcgcaggcccgcgccttctcgcaaccgacgcgctgc
ctgcaatacggcccgaccgacgggctcgccgaactcaaggcccaactcatctcgctgatg
gcgtcgcgcggcgctccgtgcgccgccgaagaaatgctggtgacgaccggatcgcaacaa
ggactcgacctgctgttgcgcgtgatggtcgcgccgggcgatgtcgtcgtgaccgagcag
cctgcctatccggcaacgttgcaggcattgcgactgcaacaggcgaagatcgtgacggtg
cctgtcgacgccgaggggctgaacgtcgatcatttgagcgccctgctgcgcgagggcaag
atcgccgtgccgaagcttctgtacaccgtgccgacgtttgccaatccgacgggcgccacg
ctctcgcgcgagcgccgcattgcgctgttgaagctggccgtggagtaccggttcgtggtc
gtggaagacgatccttatggcgacttgcgtttcgcgggcgacgccgtgccaacgctgctg
ggtctcacggcagaagtgccgggttcgcgcgactggatggtgcacttctcaagtctgtcg
aagatcgttgcaccgggattgcgtgtgggctggacggtcgcgccgccggagattacgcgc
cgctgcgtggtcgccaaacagaccgtcgatctatgcagtgtgccgtggacgcaagccgtc
gcggccgaatatcttgcggatggcgcgttgacacggcatctgccgaagatcaccgacgcg
tatcgactcaagtgcgacgccatgtgcgctgcgctgcgcgacaagctgggcgatgccatc
cagttccacgcgccgcagggcggcatgttcgtgtgggcgcgtctcgccgccgtgaagacg
agcgaattgctgccccacgcgatcgccgagaaggtgttgttcgtgccgggtacggcgttc
ttcgccgaacatgccgacgaagcatcgctgcggctctcgttcgccgcaccggcagtcacg
gtgattgaagagggggtggcacgactggcgtgcgcgatgcgcgcgaccggccagccggct
aagtaa

KEGG   Pandoraea fibrosis: PI93_010495
Entry
PI93_010495       CDS       T06385                                 
Name
(GenBank) aminotransferase class V-fold PLP-dependent enzyme
  KO
K00830  alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Organism
pfib  Pandoraea fibrosis
Pathway
pfib00250  Alanine, aspartate and glutamate metabolism
pfib00260  Glycine, serine and threonine metabolism
pfib00630  Glyoxylate and dicarboxylate metabolism
pfib00680  Methane metabolism
pfib01100  Metabolic pathways
pfib01110  Biosynthesis of secondary metabolites
pfib01120  Microbial metabolism in diverse environments
pfib01200  Carbon metabolism
pfib01210  2-Oxocarboxylic acid metabolism
pfib04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:pfib00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    PI93_010495
  09102 Energy metabolism
   00680 Methane metabolism
    PI93_010495
  09105 Amino acid metabolism
   00250 Alanine, aspartate and glutamate metabolism
    PI93_010495
   00260 Glycine, serine and threonine metabolism
    PI93_010495
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    PI93_010495
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:pfib01007]
    PI93_010495
Enzymes [BR:pfib01000]
 2. Transferases
  2.6  Transferring nitrogenous groups
   2.6.1  Transaminases
    2.6.1.44  alanine---glyoxylate transaminase
     PI93_010495
    2.6.1.45  serine---glyoxylate transaminase
     PI93_010495
    2.6.1.51  serine---pyruvate transaminase
     PI93_010495
Amino acid related enzymes [BR:pfib01007]
 Aminotransferase (transaminase)
  Class V
   PI93_010495
SSDB
Motif
Pfam: Aminotran_5 Cys_Met_Meta_PP Met_gamma_lyase
Other DBs
NCBI-ProteinID: QHF13011
LinkDB
Position
2336197..2337417
AA seq 406 aa
MLKLDFHPSGRHFLQIPGPSPVPDRILRAMSYPTIDHRGPEFGALGRKVLADIKKIFKTE
QPVVIYPASGTGAWEAALTNTLSPGDHVLMFETGHFSTLWKKMAENLGLKPEFIGLPGTD
GWRRGVQPDMIEARLRADTTHDIKAVCVVHNETSTGVTSDIAAVRRAIDAAGHPALLLVD
TISGLGSADYRHDEWGVDVTVSGSQKGLMLPPGISFNAVSPKALEAGRHARLPRAFWGWQ
EIIEANKNGYWPYTPNTNLLYGLSEALDMILEEGLDNVFARHQRLAEATRRAVRAWGLEI
QCQDPAVYSPVLTGVVMPQGVDADDVRKRIYERFDMSLGQALGKIRGTMFRIGHLGDCND
LTLMATLAGCEMGLQISGVKLAGSGVVAAMDYLAQAKDTPSLKAAA
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgttgaagctcgatttccatccctcgggtcgccatttcctgcagatccctggtcccagc
ccggtgcccgatcgtattttgcgcgccatgagctacccgacgatcgaccaccgcggcccg
gaattcggcgcgctcggtcgcaaggtgctggccgacatcaagaagattttcaagacggaa
cagccggtcgtgatttatccggcgtcggggacgggcgcgtgggaagccgcgctgacgaat
acgctctcgcccggcgaccacgtgctcatgttcgagacggggcacttctccacgctgtgg
aagaagatggccgagaacctggggctgaagccagagttcatcggcctgccggggaccgac
ggctggcgccgtggcgtgcagccggacatgatcgaagctcgtcttcgtgccgacaccacc
catgacatcaaggccgtgtgcgtggtgcacaacgaaacctcgaccggcgtgacgtcggac
atcgcggccgtgcggcgtgccatcgacgctgccgggcatcccgcgctgctgctcgtcgac
acgatctcgggtctcggctcggccgattaccgtcacgacgaatggggggtggacgtcacc
gtctcgggctcgcagaagggcctgatgctgccgccggggatcagtttcaacgcggtctcg
cccaaggcgctcgaagccggccgccacgccaggctgccgcgcgccttctggggctggcaa
gaaatcatcgaagcgaacaagaacggctactggccgtacacgccgaacacgaatctgctg
tacggcctgtccgaagcgctcgacatgattctcgaagaagggctggacaacgtgttcgcc
cgccaccagcgtctggccgaggccacgcgccgcgcggtgcgtgcgtgggggctcgagatt
cagtgtcaggacccggcggtatacagcccggtgctcacgggcgtggtcatgccgcaaggg
gtggatgccgacgacgtgcgcaaacgcatctacgaacgcttcgatatgtcgctcgggcag
gcgctcggcaagatccgcggcacgatgttccgcatcggccatctgggcgactgcaatgac
ctcacgctcatggcaacgctcgcgggctgcgaaatgggtctgcaaatttccggcgtgaaa
ctcgccggttcaggtgtcgtcgcagccatggactacctggcacaggcaaaagatacgccg
tctctcaaggccgctgcctga

KEGG   Pandoraea fibrosis: PI93_018875
Entry
PI93_018875       CDS       T06385                                 
Name
(GenBank) aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
  KO
K05825  2-aminoadipate transaminase [EC:2.6.1.-]
Organism
pfib  Pandoraea fibrosis
Pathway
pfib00300  Lysine biosynthesis
pfib00630  Glyoxylate and dicarboxylate metabolism
pfib01100  Metabolic pathways
pfib01110  Biosynthesis of secondary metabolites
pfib01210  2-Oxocarboxylic acid metabolism
Brite
KEGG Orthology (KO) [BR:pfib00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    PI93_018875
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    PI93_018875
SSDB
Motif
Pfam: Aminotran_1_2 Asp_aminotransf
Other DBs
NCBI-ProteinID: QHF14487
LinkDB
Position
4275758..4276948
AA seq 396 aa
MHDWQYSERARNLTSSAIREILKVTERPDVISFAGGLPSPATFPVAQMRAAAERVLTESP
QAALQYSATEGFAPLREWIAKRYSRDGLALTPENILITTGSQQGLDLIGKIFIDEGSRVL
VEAPSYLGALQSFSLFAPKYVPVPTDDHGLLPEALTPEIVNGARFLYAMPNFQNPTGRRL
PMARREALAAVAKRDGLAIIEDDPYGELDYEGQRLPSLMSLAPEHVLYMGSFSKVLAPGL
RLGFIIGPQAVIAKLVQAKQAADLHTPSLTQRIAYEVVKDGFLDSHIPSIRTLYAAQAKA
MLASLAKHMPADATWTTPAGGMFIWLTLPAGIDTMQLLEKAIAQNVAFVPGAPFYVGTPQ
SNTLRLSFVTVPPEKIEVGVARLGALVAEALTRRAA
NT seq 1191 nt   +upstreamnt  +downstreamnt
atgcatgattggcaatattccgaacgtgcccgcaatctgaccagctcggccattcgcgaa
attctgaaggtgacggaacgccccgacgtcatttcgttcgccggtggcctgccctcgccg
gccaccttccccgtcgcccagatgcgcgccgccgccgagcgtgtactgaccgagtcgccg
caggctgcgctgcaatacagcgccaccgaaggtttcgcgccgctgcgcgagtggatcgcc
aagcgctactcgcgcgacggcctcgcgctcaccccagagaacatcctgatcaccacaggc
tcgcagcaaggcctcgacctcatcggcaagattttcatcgacgaaggcagccgtgttctg
gtggaggcccccagctatctgggcgccctgcaatcgttctcgctgttcgccccgaagtac
gtgccggtgccgaccgacgaccacggcctgctgcctgaagcactcacgcccgagatcgtc
aatggcgcacgcttcctgtacgccatgccgaacttccagaacccgaccggacgccgactg
ccgatggcgcgccgcgaggcactggctgcggtggccaagcgcgacggtctggcgatcatc
gaagacgatccatacggcgaactcgactacgaaggccaacgcctgcccagcctcatgtcg
ctcgccccggagcatgtgctctacatgggttcgttctcgaaggtgctcgcgccggggctg
cgactcggcttcatcatcggcccgcaggccgtgatcgccaagctcgtgcaggccaaacag
gccgccgatctgcacacaccgagcctcacgcagcgcatcgcttacgaggtcgtgaaggac
ggcttcctggattcgcatatcccgtcgatccgcacgctctacgcagcgcaggccaaggcg
atgctcgcctcattggcaaagcacatgccggcagacgccacctggaccacgccggccggc
ggtatgttcatctggttgacattgcccgcaggcatcgacaccatgcagttgctggaaaaa
gcgattgcgcagaatgtcgcgttcgtgcccggtgcaccgttttacgtcggtacaccgcaa
tcgaatacgctgcgactgtcgttcgtcaccgtgccgcccgagaaaatcgaagtgggcgtt
gcccgactgggtgcgctcgtcgcggaagccctcacgcgtcgcgctgcctga

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