Pandoraea fibrosis: PI93_009160
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Entry
PI93_009160 CDS
T06385
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI93_009160 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfib03019
]
PI93_009160 (recQ)
03400 DNA repair and recombination proteins [BR:
pfib03400
]
PI93_009160 (recQ)
Enzymes [BR:
pfib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PI93_009160 (recQ)
Messenger RNA biogenesis [BR:
pfib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PI93_009160 (recQ)
DNA repair and recombination proteins [BR:
pfib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PI93_009160 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
NepR
Motif
Other DBs
NCBI-ProteinID:
QHF12793
UniProt:
A0A5E4XS16
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All DBs
Position
complement(2045294..2047102)
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AA seq
602 aa
AA seq
DB search
MASALEVLRTVFGYNAFRGDQAAIVDHVAGGGDALVLMPTGGGKSLCYQIPALLRPGIGI
VVSPLIALMQDQVDALLQAGVRAAYLNSSLGFDEALDTERRAARGELDLLYVAPERLLTE
RFLDLLDRLDERGQLALFAIDEAHCVSQWGHDFRPEYIQLSALHERYPRVPRIALTATAD
NATRDEIQSRLGLTDARLFVSSFDRPNIRYEIVDRDNPRKQLLAFLARHRGEAGIVYCLS
RKKVEETAAWLEAQGIPALPYHAGLDAEVRRTHQQRFLREEGLVMSATVAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMTYGLNDVVVHRSRIDESNAPELQKRIE
RQKLDALLGYCEAPRCRRTVLLSYFGESSEPCGNCDVCLNPPEVFDGTVAAQKALSAILR
TGQRFGAGHLVDLLRGRSTDKIRQFGHEALPTFGVGGELDDQGWRAVFRQLIAHGIIEPD
SSQYGALTLNAAARPVLKGETTLSLRRQRPTVSKKSRFAGYASSQAIELDPADQQLFDKL
RAWRQDMAKTQQVPAYVILHDRTLRELAQRRPRHREGLVDITGLGEAKIERYGEALVELL
NA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgcactcgaagtcctccgtaccgtattcggctataacgcattccgtggcgat
caagccgccatcgtcgaccatgtggccggcgggggcgacgcgctcgtcctgatgccgacc
ggcggcggcaaatccctttgttaccagattcccgcgctgttgcgccctggtatcggcatc
gtcgtctccccgctcatcgcactcatgcaggatcaggtcgacgccctgctgcaagcgggc
gtgcgcgcggcctatctgaattccagtctcggcttcgatgaagcgctcgacaccgagcgc
cgcgccgcccgtggcgagctcgacctgctctatgtcgcgcccgagcgtctgttgacggaa
cggtttctcgatctgctcgaccgactcgacgagcgcggacaactggcgctgttcgccatt
gacgaggcgcattgcgtttcccaatgggggcacgacttccgcccggaatacatccagctc
tcggccctgcacgagcgttatccgcgcgtgccccgcattgcgctgactgcaacggccgac
aatgcgacacgcgacgagatccagtcacgccttggcctgaccgacgcgcggttgttcgtt
tcgagcttcgaccggccgaatattcgttacgaaatcgtcgatcgtgacaatccccgcaag
cagttgctggcctttctcgcgcggcatcgcggcgaggcgggcatcgtctactgcctgtcg
cgcaagaaagtggaagaaacggcggcgtggctcgaagcgcaaggcattcccgccctgccg
tatcacgccgggctcgacgccgaggtgcgccgcacgcaccagcagcgattcttgcgcgag
gaaggtctggtcatgtcggccacggtggccttcggcatgggcatcgacaagccggatgtg
cgcttcgtcgcccatctggatctgcccaagagtctcgaagcctattatcaggaaaccggt
cgcgccggtcgcgacggcgaacctgccgaagcctggatgacctacgggctgaacgacgtc
gtggtgcatcgcagccgtatcgacgagtcaaacgcaccggaactgcaaaagcgcatcgag
cgccagaagctcgacgccctgctcggctattgcgaggcaccacgctgccgccgcaccgtg
ctgctgtcgtatttcggcgagtcgagcgagccttgcggcaactgcgacgtctgcctgaat
ccgccagaggtattcgatggcaccgtcgcggcccagaaggcgctctcggccattctgcgc
acgggccagcgctttggcgccggccatctggtcgatttgctgcgtgggcgcagcaccgac
aagattcgtcagttcgggcacgaagccctgccgaccttcggtgtcggtggcgaactcgac
gatcagggctggcgcgcggtgtttcggcaattgatcgcccacggcatcatcgagcccgac
agcagccaatatggggcactgacgctgaacgctgcggcacgcccggtactcaagggcgag
accacgctatcgctgcgacgccaacgcccgactgtcagcaagaagagtcgctttgccggt
tacgcgtcgtcgcaggccatcgaactggatcctgccgatcagcaactgttcgacaagctg
cgcgcctggcggcaggacatggccaagacgcagcaggtgcctgcatacgttatcctgcac
gaccggacgctgcgtgagcttgcccaacgccgcccgcgccatcgcgaaggtctcgtcgac
atcaccggactgggtgaagcgaagatcgaacgctacggcgaagcgctcgtcgagttgctc
aacgcctga
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