Pandoraea fibrosis: PI93_011285
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Entry
PI93_011285 CDS
T06385
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pfib
Pandoraea fibrosis
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfib03009
]
PI93_011285 (dbpA)
Enzymes [BR:
pfib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PI93_011285 (dbpA)
Ribosome biogenesis [BR:
pfib03009
]
Prokaryotic type
rRNA helicases
PI93_011285 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHF13155
LinkDB
All DBs
Position
complement(2511252..2512664)
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AA seq
470 aa
AA seq
DB search
MNSKATESRNDSAPFSSLPLSPAMQENLARLGYVSMTPIQQASLPDILAGHDIIAQAKTG
SGKTAAFSLGVLQQVDARDFAVQAAVLCPTRELAEQVAQEVRRIARAEDNIKVLTLCGGS
PLRPQAESLAHGAHVIVGTPGRIMDHLERGTLSLANIKTLVLDEADRMLDMGFFDDIATV
ARQTPASRQTLLFSATYPEGIAKLAQRLLRTPREIRLEEKHDASKIRQRFYEVSENERLH
AVGQLLDHFRPVSTIAFCNTRAQCRDLTDVLRAEGFHALMLHGDLEQRERDLVLIQFANR
SCSVLVATDVAARGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADEDGWAFSLASMNEM
GRVGNIEAALGHEVPWHKLSELTPSGSAHLLPPMVTLQMLGGKKDKIRPGDVLGALTGEA
GFAAAQIGKINVLENFTYIAVDRDIAPTALRKLADGRVKGRKVKVRFLQD
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaactcaaaagccaccgaatcgcgcaacgacagcgcccccttctcgagcctgccgctc
tcgcctgccatgcaggagaacctcgcacggctcggttacgtctcgatgacgcccatccag
caggcgtccttgccggacatcctcgccggccacgacatcatcgcgcaggccaagaccggc
agcggcaagaccgccgccttctctctgggcgtgctccagcaagtcgatgcccgcgacttc
gccgtgcaggccgctgtgctttgccccacgcgcgaactcgccgaacaggtcgcacaggaa
gtgcgacgcatcgcacgcgccgaagacaacatcaaggtcctcacgctgtgcggcggctcg
ccgctgcgtccgcaggcggaaagcctggcccacggcgcccacgtgatcgtcggcacaccg
ggacgcatcatggaccacctggagcgcggcacgctttcgctcgccaacatcaagacgctg
gtgctcgacgaagccgaccggatgctcgacatgggctttttcgacgacatcgccaccgtt
gcgcgtcaaacgcccgcctcgcgccagacactgctcttctccgccacttatccggaaggc
atcgccaagctcgcccaacgcctgctgcgcacgccgcgcgaaattcgtctggaagagaag
cacgacgcgagcaagattcgtcagcgcttctatgaagtgagcgaaaacgagcgtttgcat
gccgtcggccaactgctggaccatttccgcccggtcagcaccatcgcgttctgcaatacc
cgggcacaatgccgggatctgaccgacgtgctgcgcgccgagggctttcacgcgttgatg
ctgcacggcgatctggagcagcgcgagcgcgatctggtgctgatccagttcgccaatcgc
agttgctcggtactcgtggcgaccgacgtggccgcgcgcgggctggacatcgcgcaactc
gaagcggtgatcaacgtcgacgtgacgcccgaccccgaggtgtacgtccaccgcatcggc
cgcacgggccgtgccgacgaggacggctgggcgttcagtctggccagcatgaacgagatg
ggacgcgtgggcaatatcgaagccgcgctgggccacgaagtgccgtggcacaagctctcg
gaactcacgccgtcgggtagcgcacacctgctgccaccgatggtcacgcttcagatgctg
ggcggcaagaaggacaagattcgtccgggcgacgtactcggcgcgctcaccggcgaggcc
ggctttgcggcggcccagatcggcaagatcaacgtgctcgagaacttcacgtatattgct
gtggaccgcgacatcgcgccaaccgcgctgcgcaagctggcagatggccgtgtcaaaggc
cgcaaggtcaaggtaagattcctgcaggattaa
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