Pandoraea fibrosis: PI93_012010
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Entry
PI93_012010 CDS
T06385
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib03420
Nucleotide excision repair
pfib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PI93_012010
03430 Mismatch repair
PI93_012010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfib03400
]
PI93_012010
Enzymes [BR:
pfib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PI93_012010
DNA repair and recombination proteins [BR:
pfib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PI93_012010
MMR (mismatch excision repair)
Other MMR factors
PI93_012010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
AAA_22
DUF6181
Motif
Other DBs
NCBI-ProteinID:
QHF13281
LinkDB
All DBs
Position
2689907..2692228
Genome browser
AA seq
773 aa
AA seq
DB search
MPDLLANLNPEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQQGHVGPAGILAVTF
TNKAAKEMQARLGAMLPISTRAMWIGTFHGLCNRMLRAHFRDAGLPQSFQILDQADQLSA
IKRMMKAANVDDEKYPPKNLQYFINNAKEQGLRPHEVEANDAFNQKFVELYTAYQEQCQR
EGVVDFAELLLRCFELLKHNEPLRVHYQSRFRHILVDEFQDTNKLQYAWLKMLAGSNAAV
FAVGDDDQSIYAFRGANVGNMADFEREFRVRHMIKLEQNYRSHGNILDAANALISNNARR
LGKNLRTDAGHGELIRVYEAATDLQEASWLVEEIKALVAQGLSRQDIAILYRSNAQSRVM
EHALVGAGIAYRVYGGLRFFERQEVKHALAYLRLIENPNDDTAFARVVNFPTRGIGARSL
EQLADAARLYNCSMYAAVPYMTGKAGTNLTAFVRLIEQMRQDTARLTLPEVVTHIIDASG
LIAHYQTEKEGQDRIENLQELVHAATAFIAEEGYGLDAPARLIAMRPALPGAPDVLASPD
GVVDADTPVEMTPLAGFLSHASLEAGDNQAEAGQDAVQLMTVHAAKGLEFTAVFVTGLEE
GLFPHENSALELDGLEEERRLMYVAITRAKERLYLSFTQSRMLHGQTRYNVRSRFFEEIP
EEVLKFLTPRAQPGARLGQAEPAWGRDWFSRPQVGATKQDEWVATKSEQALADRSRSSET
GFKLGQGVFHTKFGEGKIIGLEGTGVEARAHVKFGRHGEKWLALAVAKLQPIE
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctgctagccaacctgaaccccgaacaactggccgccgtgacactcccggac
gagccagcccttattctcgcgggcgcaggatccggcaagacgcgcgtgctcacgacccgt
atcgcctggctgatccagcagggccatgtgggtccggcgggcattctggccgtgaccttt
accaacaaggcggccaaggaaatgcaggcccgtctgggcgcgatgctgccgatcagcacc
cgggccatgtggatcggcaccttccacgggctgtgcaaccgcatgctgcgcgcgcatttc
cgcgacgccgggctgccgcagagcttccagatcctcgatcaggccgaccagctctccgcc
atcaaacggatgatgaaagcggcaaacgtcgacgatgagaagtatccgccgaaaaacctg
caatatttcatcaataacgccaaggaacaggggctgcgccctcacgaggtcgaggccaac
gacgccttcaaccagaagttcgtcgagctgtacaccgcctatcaggagcagtgccagcgc
gaaggcgtggtcgatttcgccgaactgctgctgcgctgtttcgagctgctcaagcataac
gagccgctgcgcgtgcattaccagtcgcgctttcgtcatattctcgtcgacgagttccag
gacacgaacaagctccagtacgcatggctcaagatgcttgcggggtcgaacgcggccgtg
ttcgccgtgggggacgacgatcagagcatctacgcgtttcgtggtgccaacgtcggcaat
atggccgacttcgaacgcgaattccgtgttcggcacatgatcaagctggagcagaactac
cgttcgcacggcaacatcctcgatgccgccaatgcgttgatttcgaataacgcgcggcgt
ctgggcaagaatctgcgcaccgatgcgggacatggtgagttgatccgtgtctacgaggcc
gcgaccgacttgcaggaggcgagctggctcgtcgaagagatcaaggcgctcgtcgcgcag
gggctgtcgcggcaggacatcgccattctctatcgcagcaacgcgcagtcgcgggtgatg
gagcacgcgctggtcggcgccggcattgcgtatcgcgtgtacggcggactgcgctttttc
gagcgccaggaagtcaagcacgccctggcgtacctgcgtctgatcgagaatccgaacgac
gatacggcattcgcccgcgtcgtgaacttcccgacgcgcgggattggcgcccgttcgctc
gaacaactggccgacgcggcgcgtctgtacaactgctcgatgtacgccgccgtgccctat
atgaccggcaaggctggcaccaatctgacggcattcgtccgattgatcgagcagatgcgt
caggacaccgcgcgcctcacgctgccggaggtcgtcacgcacatcatcgatgcgagcggg
ttgattgcgcattatcagaccgagaaagaaggtcaggatcgtatcgagaacttgcaggaa
ctggtgcacgccgccacggcgttcatcgccgaggaaggctatgggctcgacgcgccggcg
cgtttgatcgccatgcggcccgcgttgccgggcgcgcctgacgtgctggcatcccccgac
ggtgtggtcgacgccgacacaccggtggagatgacgcctctggccggcttcctctcgcac
gcgtcgctcgaggccggggataaccaggcagaggccgggcaagatgccgtgcaactgatg
acggtgcacgcggccaaggggctcgaatttacggcggtcttcgtcaccgggctggaagaa
gggctgtttccgcatgaaaacagtgcgctcgaactcgacggcctcgaagaagagcgccgg
ttgatgtatgtggcgatcacgcgcgccaaggagcggttgtatctctcgttcacgcagagc
cggatgctgcacggccagacccgttacaacgtgcgttcgcgcttcttcgaggaaattccg
gaggaggtgctcaagttcctgacgccgcgcgcgcaaccgggcgcacgtctgggacaggcc
gagccggcgtgggggcgcgactggttttcgcgtccgcaggtgggagcgacaaagcaggac
gaatgggtggcgaccaagtcggaacaggcccttgctgaccgttcgcgctcgtcggagacg
ggcttcaagctggggcagggggttttccacaccaagttcggtgagggcaagatcatcggg
ctcgaggggacgggcgtggaagcgcgcgcacacgtgaagtttggccgtcacggcgagaag
tggctcgcgctggccgtcgcgaaacttcagccgatcgagtaa
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