Pandoraea fibrosis: PI93_012040
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Entry
PI93_012040 CDS
T06385
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib03030
DNA replication
pfib03410
Base excision repair
pfib03420
Nucleotide excision repair
pfib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PI93_012040 (polA)
03410 Base excision repair
PI93_012040 (polA)
03420 Nucleotide excision repair
PI93_012040 (polA)
03440 Homologous recombination
PI93_012040 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfib03032
]
PI93_012040 (polA)
03400 DNA repair and recombination proteins [BR:
pfib03400
]
PI93_012040 (polA)
Enzymes [BR:
pfib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PI93_012040 (polA)
DNA replication proteins [BR:
pfib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PI93_012040 (polA)
DNA repair and recombination proteins [BR:
pfib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PI93_012040 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PI93_012040 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QHF13286
LinkDB
All DBs
Position
2697089..2699827
Genome browser
AA seq
912 aa
AA seq
DB search
MSEQQSLEGKTLLLVDGSSYLYRAYHALPDLRGPNGEPTGALHGIVNMLRRMRKDVHAEY
SACVFDAKGKTFRDDWYPEYKANRPSMPEDLRAQIEPIHEAVRAMGWPLLMIDGVEADDV
IGTLAKQAAERGMRVVVSTGDKDLAQLVNDRVTLVNTMTNETLDADAVTAKFGVPPERIV
DYLTLVGDTVDNVPGVEKCGPKTAVKWLTQYGDLDNLVANAADVKGAVGENLRRALDWLP
MGRKLVTVALDCDLAPQVTSIEASLQTQPEDVETLRDFFARHGFKTLLREAETAVAAQAG
EDAPAPVADTIERQYEAVLTWEQFDAWLKIIEAAELTAFDTETTSLDAMQAQLVGLSFSC
EPGRAAYIPVAHRAPGEVEQLPRDEVLARLKHWLESPDHKKVGQNLKYDSHVLENYGILL
GGIAHDTLLQSYVVESHRSHDMDSLASRHLGVTTIKYEDVCGKGAKQIGFDDVGIEQATA
YAAEDADITLRLHRALYPDVAREATLEFVYSNIEMPTARVLQRMERNGVLVDSARLAAQS
DEIGHKLIALETEAYALAGQQFNLNSPKQIGDIFFTQLQLPVVKKTASGAPSTDEEVLQK
LAEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPSTGRVHTNYAQAVAITGRLASNDPNL
QNIPVRTAEGRRIREAFIAPPGSQLVSADYSQIELRIMAHISGDESLLRAFANGEDIHRA
TAAEIFAVTPLEVSSEQRRYAKVINFGLIYGMSAFGLAANLGIERDAAKQYIDRYFMRYP
GVARYMDETRKSAKARGFVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLI
KLSMIAVQRWLDDSGLQTRQIMQVHDELVLEVPDHELAEVRKRLPELMCGVAKLRVPLVA
EVGVGENWEQAH
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacagcaaagtctggaaggtaagacgctcttattggtcgatggttcgagttat
ctttatcgagcctatcacgccctgccggatttgcgcggccccaacggcgaacccaccggg
gcgctgcacggcatcgtcaatatgctgcgccgcatgcgtaaagacgtacatgcagagtat
agcgcctgcgttttcgacgccaagggcaagacctttcgcgacgattggtaccccgaatac
aaggcgaatcgcccttcgatgccggaagatctgcgcgcacagatcgaaccgattcacgaa
gccgtgcgcgccatgggctggccgctgctgatgatcgacggcgtggaagccgacgacgtg
atcggcacgctggcgaaacaggccgccgagcgcggcatgcgcgtggtggtctccacgggc
gacaaggatctggcgcaactcgtgaacgatcgcgtcacgctcgtgaacacgatgaccaac
gagacgctcgacgcggatgccgtcacggcgaaattcggcgtgccccccgagcgcattgtc
gactacctgacactggtgggcgatacggtcgataacgtaccgggcgtggaaaagtgcgga
ccgaagacggccgtcaaatggctcacgcaatacggcgatctcgataacctcgtcgcgaat
gcggccgatgtgaaaggggcggtgggcgagaatctgcgccgcgcgctcgactggctgccg
atggggcgcaagctcgtgacggtcgcgctcgattgcgatctcgcgccgcaggtgacctcc
atcgaggcgagcttgcagacgcaacccgaagacgtggagacgctgcgcgatttcttcgcg
cgccacggcttcaagacgctgctgcgcgaagccgagacggccgttgccgcgcaggccgga
gaggacgcgccggcaccggtggccgacacgatcgagcgtcagtacgaagcggtgctgacg
tgggagcagttcgacgcgtggctgaagatcatcgaagccgccgaattgacggcattcgac
acagagaccacctcgctcgatgccatgcaggcgcagcttgtgggcctgtcgttttcctgc
gagccggggcgtgccgcttatattcccgtggcgcatcgcgcgccgggcgaggtcgagcaa
ttgccgcgcgacgaagtgctcgcgagattgaagcattggcttgagagtccggaccacaag
aaggtcggtcagaacctgaagtacgactcgcatgtgctcgagaattacggcatcttgctg
ggcggtatcgcccacgacacgctgcttcagtcatacgtggtcgaatcgcaccgcagccac
gatatggatagtctggcgtcgcgtcacctcggtgtgacgacgatcaagtatgaggacgtg
tgcggcaagggcgccaagcagatcggtttcgacgatgtcggtatcgaacaggccacggca
tacgcggcggaggacgccgatatcacgttgcgtttgcaccgcgcgctctatcccgatgtc
gcgcgcgaagccacgctggaattcgtctacagcaacattgaaatgccgacggcacgtgtg
ctccagcgtatggagcgcaatggggtgctcgtcgattcggcacgcctcgccgcgcaaagc
gacgaaatcggccacaagctgattgcgctggaaaccgaggcctacgccttggccgggcag
caattcaacctgaattcacccaagcagatcggggatatcttcttcacgcaactgcaactg
ccggtcgtcaagaagacggccagcggtgcaccatcgaccgatgaggaagtgcttcagaag
ctggccgaggattatccgttgccgaaggtgttgctcgactaccgaggcctggccaagctc
aagtcgacctataccgacaagttgccgaagatggtgaatccgtcgaccgggcgagtccac
acgaactatgcacaggcggtcgcgatcaccggacgtctggcgtcgaacgatccgaatttg
cagaacattccggtgcgcacggccgaggggcgtcgtattcgcgaggcgttcattgcgccg
ccgggcagccaactggtttccgccgactattcgcagatcgagttgcgcatcatggcgcat
atctcgggcgacgaaagcctgctgcgcgcgtttgccaacggcgaggacatccaccgggca
acggcggcggaaatctttgccgtcacgccgctcgaagtctcttccgagcagcgtcgctac
gccaaggtcatcaacttcggtctgatctacggcatgagcgcgtttggcttggccgcgaac
ctcgggatcgagcgagacgccgccaagcaatacatcgaccgctacttcatgcgttacccc
ggcgtggcgcgttatatggacgagacgcgcaagagcgccaaggcgcgcggctttgtcgag
acggtgttcggccgccggttgtggctgccggatatcaacggtggcaacggcccgcgccgt
caggccgccgagcgcgccgccatcaacgcgccgatgcagggcacggccgccgatctcatc
aagctgtcgatgatcgccgtgcagcgctggctggacgatagcggcttgcagacgcgtcag
atcatgcaggtgcacgatgaactggtgctggaagtgcctgatcacgaactggccgaggtt
cgcaagcgtttgccggaactgatgtgcggcgtggcaaagctgcgtgtgccgctcgtcgcc
gaagtcggcgttggcgagaattgggaacaggcccactga
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