Pandoraea fibrosis: PI93_012115
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Entry
PI93_012115 CDS
T06385
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pfib
Pandoraea fibrosis
Pathway
pfib02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PI93_012115 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfib03021
]
PI93_012115 (rpoD)
Transcription machinery [BR:
pfib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PI93_012115 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
SPO22
Motif
Other DBs
NCBI-ProteinID:
QHF15742
UniProt:
A0ABX6HXQ7
LinkDB
All DBs
Position
2717181..2719550
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AA seq
789 aa
AA seq
DB search
MTDVTKRKSATAAKVGAAKAAKPTVKSEPPVKATKTATTAKATAGGKPQARQPAEKSAKS
ATTAKASTLAGRSTPATRAPRKTGASRKPEAVDVTPATVEPPVSKTRGKAAKTAAPGVQN
VAANTNDQPVNEDQTKVEKQKARDRRAKEKALLKDAFSSHQPGTAEELEERRGKLRTLIK
LGKERGFLTFAEINDHLPDDVVEGDALEGVIATFNDMGVAVYEQAPDAETLLLNDNAPNA
ATDDEVEEQAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHM
VQAISACPTTIAEILAMAEKVEREEMRIDEVVDGLIDPNADAVAAAASEDEDFDADADAD
AEEEEEESDEEDDSNSGGGASAAQVEQLKRDALAKFSVIAEWFGKMRRAFEKEGYQSKPY
VKAGEAIQMELMTIRFTARTVERLCDTLRSQVDEVRNIERAILNIVVDKCGMPRADFVQR
FPGNETNVDWIYTVVADNKAYSSVVERNVPAVRELQQKLIDLQARVVLPLTELKDVNRKM
AEGERRARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGVEPDPATLAE
KMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTGTVAPADAALHGSMRDVVK
DVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSD
KLKSFLEGN
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatgtcaccaaacgcaagagtgcgaccgccgcgaaggtgggggctgcgaaagcg
gccaagccgacggtgaagtccgagccgcccgtcaaagcgacgaagacggcaacgaccgcg
aaggcgacggcaggcgggaaaccgcaggcccgacaacccgctgaaaaaagcgcaaagagc
gcaactaccgccaaggcgtcgaccttggcgggccgcagtacacctgcaacgcgagcccca
cgcaagaccggggcttcacgcaaacccgaggcagtggatgtcacgccggcaacagtggaa
ccgcccgtctccaagacgcgtggcaaggccgcgaagaccgccgctccgggagtgcaaaac
gttgcagcgaatactaatgatcaacccgtgaacgaagatcagaccaaagtggaaaagcag
aaggcgcgtgatcgccgggcaaaagagaaagcactgctcaaggacgcattttcctcgcac
cagcccggtacggccgaggaacttgaggaacgtcgcggcaaactgaggacactgatcaag
ctgggcaaggaacgtggcttcctgacctttgcagagatcaacgaccacctgcccgacgac
gtggtggagggcgacgcgctggaaggcgtgatcgcaacgtttaacgacatgggcgtggcc
gtctacgagcaggcgccggatgctgaaacgctgttgctcaacgacaatgcgccgaacgct
gcaacggacgacgaagtcgaggagcaagcggaagcggccctgtcgacggtcgattccgag
ttcggtcgcacgaccgacccggtgcgtatgtacatgcgcgaaatggggaccgtcgagctg
ctcacgcgcgaaggtgaaatcgagatcgccaagcggatcgaggaaggcctgaagcacatg
gtgcaggcgatttctgcgtgcccgacgacgatcgccgagatcctggccatggccgagaag
gtcgagcgcgaagaaatgcgcatcgacgaagtggttgacggcctgatcgatccgaatgcg
gatgccgttgcggcagccgcctccgaagacgaagatttcgacgcggatgcggacgcagac
gcggaagaagaggaagaagagtcggacgaggaagacgacagcaacagcggtggcggtgct
tcggctgcgcaggtcgagcagctcaagcgcgacgcgctcgccaagttctccgtgatcgcc
gagtggttcggcaagatgcgccgtgcgttcgagaaggaaggttatcagtcgaagccgtat
gtgaaggctggcgaagccatccagatggaactgatgacgattcgcttcacagcacgcacg
gtcgagcgtctgtgcgacacgctgcgttcgcaggtggacgaagtgcgtaacatcgagcgt
gcgatcctgaacatcgtggtcgacaagtgcggcatgccgcgcgcggatttcgtgcagcgt
ttcccgggcaacgaaaccaatgtcgactggatctacaccgtggtggccgataacaaggcc
tacagctcggtggtggaacgtaacgtgccggccgtgcgagaacttcagcagaagttgatc
gacttgcaggcacgcgtggtgttgccgctcacggaactcaaggacgtcaatcgcaagatg
gcggaaggtgagcgtcgtgcccgcaaggccaagcgtgagatgaccgaagcgaacttgcgt
ctggtgatctcgatcgcgaagaagtacacgaaccgtggtctgcagttcctggatctgatt
caggaaggcaacatcggcctgatgaaggcggtggacaagttcgaatatcgtcgcggttac
aagttctcgacgtatgccacgtggtggattcgtcaggcgattacgcgttcgattgcggat
caggcacgtaccatccgtattccggtgcacatgatcgaaacgatcaacaagatgaaccgg
atttcgcgtcagattctgcaggagaccggtgttgagccggatccggcaacgctggccgag
aagatggaaatgccggaagacaagatccgcaagatcatgaagatcgcgaaggaacctatc
tccatggaaacgccgatcggtgacgacgacgattcgcatttgggcgatttcatcgaagat
actggcacggtagcgcctgctgacgccgcattgcatggtagtatgcgcgacgtcgtgaag
gacgtgcttgattcgctgacgccgcgcgaggccaaggtgctgcgcatgcggttcggtatc
gagatgagcacggaccatacgcttgaggaagtgggcaaacagtttgacgtgacgcgcgag
cgtattcgtcagatcgaagccaaggcgctgcgcaagctgcgtcacccgagccgttccgac
aagctcaagtcgttcctcgaaggcaattga
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