Pandoraea fibrosis: PI93_018300
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Entry
PI93_018300 CDS
T06385
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PI93_018300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pfib03000
]
PI93_018300
03400 DNA repair and recombination proteins [BR:
pfib03400
]
PI93_018300
Enzymes [BR:
pfib01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PI93_018300
Transcription factors [BR:
pfib03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PI93_018300
DNA repair and recombination proteins [BR:
pfib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PI93_018300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
HHH
HHH_2
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QHF14381
LinkDB
All DBs
Position
4159467..4160954
Genome browser
AA seq
495 aa
AA seq
DB search
MTLDPEVCYKAVSARDRRFDGWFFVGVSSTGIYCRPVCNVRTPRFENCTFYGSAAAAEKA
GYRPCLKCRPELAPGGARFDATRELADAAAAMIDEGFLNRAGLPALAARIGITERHLRRI
FADEFGVSPIEYAQTQRLLLAKRLLTDTALPVTEIALASGFGSVRRFNGLFKTRYGFAPG
RLRLNARHARLPDGDLVFQLAYRPPFAWHALLDFLGDRAIEGVELREGDVYTRTLNIERQ
DGQTVAGWCRIVPLPDRHALQVTLPPVLAGSVPQVLGKLRHLFDLGARPDVIDAHLGQLA
ATTPGLRVPGAVDGFEIAVRAIVGQQITVKGARRLLGRLAQRFGTPLPAPAHGLTHTFPS
AAQLLAASSDSLGQAGIIRSRIAAIHGVAQAIVDGHLRLDPLAPLEATIEALLAIKGIGP
WTAQYIAMRALGSPDAIPVDDLVLRQALGVTDGRAVAARTTQWAPWRAYAALHIWRAAAQ
GPAGQPVETLQEVLA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgaccccgaagtctgttacaaggccgtctccgctcgcgaccggcgcttcgac
ggctggttcttcgtcggcgtgtcctccaccggcatctactgccgcccggtgtgcaacgtg
cgaacgccgcgcttcgagaattgcaccttctacggcagcgccgccgctgccgagaaggcc
ggttaccgcccttgtctgaagtgccgccctgaactcgcccccggcggcgcgcgtttcgac
gccacccgcgaactcgccgacgccgccgccgcgatgatcgacgaaggcttcctcaaccgc
gccggactcccggcactcgcggcccgcatcggcatcacggaacgccatctgcgccgtatc
ttcgccgacgagttcggtgtctcgcccatcgagtacgcgcagacgcaacggctgctgctc
gccaagcgtctgctcaccgatacggcgctgccggtgacggaaatcgccctcgcctccggt
ttcggcagcgtccgacgcttcaacggcctgttcaaaacccgctacggcttcgcccccggc
cggcttcgcctgaatgcccgccatgcgcggctccccgatggcgatctcgtattccagctc
gcctaccggccgccctttgcctggcacgccctcctcgacttccttggcgaccgggcaatc
gaaggcgttgaactgcgcgagggcgacgtctacacccgcacgctgaacatcgagcgacaa
gacgggcaaaccgtcgccggatggtgtcgcatcgtgccgctgccggatcgccacgcgttg
caagtgacgctgccgcccgtgctggccggcagcgtgccccaggtgctgggcaaactgcgc
catctgttcgacctgggtgcgcgtccggacgtcatcgacgcccatctcgggcaactcgct
gcgacaaccccgggcctgcgagtgccgggcgcggtcgacggcttcgagattgccgtgcgc
gccatcgtcggtcagcaaatcactgtcaaaggcgcccgacgcttgcttgggcgcctcgcg
caacgcttcggcacgccgctgcctgccccggcgcatggtctgacgcacaccttccccagc
gccgcgcaactgctcgccgcctcctccgactcacttggccaggccggtatcattcgaagt
cgaattgccgcgatccacggggtcgcgcaggcgatcgtcgatggccacctgcggcttgac
ccactggcaccgctggaagccaccatagaggcgctgctcgctatcaagggcatcggaccg
tggacggcgcagtacatcgcgatgcgcgccctcggttcgcccgacgcgatccccgtcgac
gatctggtactgcgtcaggcactgggcgtgaccgacggacgcgccgtcgccgcacgcacg
acccaatgggcgccgtggcgcgcctacgcggcgctgcatatctggcgcgcggcagcacaa
ggaccggcaggccaaccggtcgagactttgcaggaggtattggcatga
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