Pandoraea fibrosis: PI93_023330
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Entry
PI93_023330 CDS
T06385
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfib
Pandoraea fibrosis
Pathway
pfib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI93_023330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfib03019
]
PI93_023330
Enzymes [BR:
pfib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PI93_023330
Messenger RNA biogenesis [BR:
pfib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PI93_023330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
CARD_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
QHF15256
UniProt:
A0ABX6HWE8
LinkDB
All DBs
Position
complement(5285106..5286707)
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AA seq
533 aa
AA seq
DB search
MSFETLGLSADILRAVADLGYTAPTPIQLQAIPAVLQGGDLLAGAQTGTGKTAGFTLPIL
QMLASRARPAAANGKRPVRALVLTPTRELAAQVEESVTQYGKYLRLTSMTVFGGVSMVPQ
VKQLARGVDILVATPGRLLDHMQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRVLAVLP
AKRQNLLFSATFSDEIKQLADGLLKSPALIEVARRNTTAETVAQKIHPVDRDRKRELLEH
LVREHNWFQVLVFTRTKHGANRLAEQLTKGGIPALAIHGNKSQGARTRALAEFKSGTLQV
LVATDIAARGIDIDQLPHVVNFDLPEVAEDYVHRIGRTGRAGANGEAVSLVCVDEHQLLT
QIERLIKRTIEREVIPGFEPDPHAVAQPIRKAQQGRGAGGGRGGRSGGDEARQPARAPRE
AREAKPRREGDRGGRQGGNGGKAGTGVSAGNAGNAGQPRQPAPKRQGDAQRAPARAAQGS
GTPRQGQDGRSSQNAPRGQGGGGERGDFAQRGPRPARRDGVGGALLMGKPKRD
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaacgctcggcctgtcggccgacatcctgcgtgcggttgccgatctcggt
tataccgctccgactccgattcaactgcaagcgattccggccgtcctgcaaggcggcgat
cttctcgccggtgctcagaccgggaccggtaaaacggcaggcttcacgctgccgatcctg
cagatgctggcttcgcgcgcacgccctgcggccgcgaacggcaagcgccccgtgcgcgcc
ctcgtgctgacccccacgcgcgaactggccgcacaggtcgaggaaagcgtcacgcaatac
ggcaaatacctgcgcctgacctccatgaccgtgttcggcggtgtgtcgatggtgccgcag
gtcaagcaactggcacgcggcgtggatattctcgtcgccacaccgggtcgtctgctcgat
cacatgcagcagaagacggtcgatctgtccgctgtcgagattctcgtactggacgaggcc
gaccgcatgctcgacatgggcttcattcgcgatatccgccgcgtgctggcggtgctgccc
gcgaaacgtcagaacctgttgttctcggccacgttctccgacgagatcaagcagctggcc
gacggtctgctcaagtcgccggcgctcatcgaagtggcacgtcgcaacacgaccgccgag
actgtcgcgcagaagattcacccggtcgatcgcgaccgcaagcgcgagttgctcgaacac
ctcgtgcgcgagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcg
aaccgtctggccgaacaattgacgaagggcggcattcccgcgctggccattcacggtaac
aagagtcagggcgcgcgcacgcgtgcgctcgccgaattcaagagcggcacgctgcaagtg
ctggtcgcgaccgatatcgcggcgcgcggcatcgatatcgaccaactgccgcatgtggtc
aacttcgatctgccggaagtggcggaagattacgtgcaccgtatcggccgcacgggccgc
gcgggtgcgaacggtgaagccgtatcgctcgtgtgcgtggacgaacaccaactgctcacg
cagatcgagcgtctcatcaagcgcaccatcgagcgcgaagtgattccgggcttcgagccg
gacccgcacgccgtggcgcagccgattcgcaaggcccaacaaggccgtggtgccggtggc
ggacgcggtggacgcagcggtggtgacgaggcacgtcaaccggcacgcgcaccgcgcgaa
gcccgtgaagcgaagccgcgtcgcgaaggcgatcgcggtggccgtcagggtggcaatggt
ggcaaggccggtaccggcgtgagtgccggaaacgccggaaatgccggtcagccgcgccag
ccggcacccaagcgtcagggcgatgcgcagcgcgcccccgcgcgtgctgcacagggttcc
ggcacgccgcgtcagggtcaggatggccgcagttcgcagaacgcaccgcgcggtcagggc
ggtggtggcgagcgaggcgacttcgcccagcgcggtccgcgcccggcgcgtcgcgatggc
gtcggcggtgccctgctgatgggcaaaccgaaacgcgactaa
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