Paracoccus fistulariae: JHX87_10075
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Entry
JHX87_10075 CDS
T08856
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfis
Paracoccus fistulariae
Pathway
pfis03030
DNA replication
pfis03430
Mismatch repair
pfis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JHX87_10075 (dnaE)
03430 Mismatch repair
JHX87_10075 (dnaE)
03440 Homologous recombination
JHX87_10075 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfis03032
]
JHX87_10075 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfis03400
]
JHX87_10075 (dnaE)
Enzymes [BR:
pfis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JHX87_10075 (dnaE)
DNA replication proteins [BR:
pfis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JHX87_10075 (dnaE)
DNA repair and recombination proteins [BR:
pfis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JHX87_10075 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
WCR05878
UniProt:
A0ABY7SFT6
LinkDB
All DBs
Position
complement(2038463..2041948)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSIKSPRFIHLRTHSEHSLLEGAIPVAKLPVLAAEAGMPAVALTDSNAMFAALEFSVKAM
DKGVQPIIGCQITLEAGETGPVVLLAQNRAGWLNLMALSSCLYLRADGSLPHVTLEELVQ
RAEGLICLTGGALGPLGQMIAKGRADQAADLAAQLQAAFPTRLYIELQRHPGENGKLTEA
EAATEPGLIALAYARELPLVATNDVYFPKPDMYEAHDALICISEKAYVDQAQPRRRLTAQ
HYFKTAEEMAVLFADLPEALENTVEIARRCAFAVSKHKPILPKFADDEVQELRRQAKEGL
AERLKVIPHAVSVEDYEKRLDFELGIIEQMGFPGYFLIVADFIKWAKDHDIPVGPGRGSG
AGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIQYVQGKYGRD
KVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRLSKMIPVEGVKPVSIVKARAEEPRLRE
AAREEVIGRLLDYAEKLEGLYRNASTHAAGVVIGDRPLDQLVPLYRDPASDMPATQFNMK
WVEQAGLVKFDFLGLKTLTVIQNAVDLINGGGRPLHVAADGRQLYEPPEGAENQINAIPL
DDKASYDLFACARTVAVFQVESSGMMDALRRMRPTCIEDIVALVALYRPGPMENIPTYCE
VKNGQRDLQPLHPSIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAE
EMAKERPKFVDGSVANGVDAKKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANH
PVEFMAAVMNCDIHLTDKLAIYKREVDRMGIEIVPPCVNRSAPKFTVKDGRIHYALGALK
GVGLEAMRLIHEARVSPEGEDRPFRDMNDFARRVDMKRVGKRPLEMLARAGAFDVLDDNR
SRVLKSLDGLVAWSAAVQEQAASNQSSLFGGGEDLPPPRPPMAQVWLPTEKLGEEHRAVG
FYLSGHPIDDYLPALRRKKVQTLAEITAEAEGGPLVTSIAGTVSARQERKSAKGTQYAFV
SLSDPTGLYEVTVFSDLLNAARDRLEPGQNVVLQVKVEPSGDQVKMLANSVTPLEDAVAD
AGAGCLAVEMQGADTIPRLAETLERIKSDIAASSRSRGPVLLRIREGDELIEIEVANDTP
LTTPARQALRAVPGVLDVIEE
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtcaataaaatccccccgattcatccatctgcgcacacattccgagcattccctgctt
gaaggtgcgattcccgtggcgaaactgcccgttctggcggccgaggccgggatgccggcc
gtcgccctgaccgacagcaatgccatgttcgcggcgctggaattcagcgtgaaggcgatg
gacaagggggtgcagcccatcatcggctgtcagatcacgcttgaggccggggaaaccgga
cccgtcgtgctgctggcgcagaaccgggcgggttggctgaacctgatggcgctgtcctct
tgcctgtatctgcgggcggatggatccttgccgcatgtcacgctggaggaactggtccag
cgggccgaggggctgatctgcctgaccggcggcgcgcttgggccgctgggccagatgatc
gccaaggggcgcgcggatcaggctgcggatctggccgcgcaattgcaggcagccttcccg
acgcggctttacatcgaattgcagcgccatcccggcgagaatggcaaactgaccgaggcc
gaggccgcgaccgaaccggggctgatcgcgctggcctatgcccgcgaactgccgctggtt
gcgaccaatgatgtctatttccccaagcccgacatgtacgaggcgcatgacgcgctgatc
tgcatttccgaaaaggcctatgtcgatcaggcgcagccccgccgccgcctgactgcgcag
cattacttcaagacggccgaggaaatggcggtgctgttcgccgacctgcccgaggcgctg
gaaaacaccgtcgaaattgcccggcgctgcgccttcgcggtcagcaagcacaagcccatt
ctgccgaaattcgccgatgacgaggtgcaggaactgcgtcgtcaggccaaagagggtctg
gccgagcgtctgaaggtgatcccccatgccgtcagcgtcgaggattacgaaaagcgtctg
gatttcgaactgggcatcatcgagcagatgggctttcccggctatttcctgatcgtggcc
gatttcatcaaatgggccaaggatcacgatatcccggtgggtccggggcgtgggtcgggg
gcgggatcgctggtcgcctatgcgctgaccatcaccgatctggatcccttgcgctacagc
ctgctgttcgaacgcttcctgaatcccgaacgggtcagcatgccggatttcgacatcgat
ttctgcatggatcgccgggaagaggtgatccagtatgtgcagggcaaatatggccgcgac
aaggtcggccagatcatcaccttcggcgcgctactgtccaaggccgccgtgcgcgatgtg
ggccgggtgctgcaattgccctttggtcaggtggaccgcctgtccaagatgatcccggtc
gagggtgtgaagcccgtcagcatcgtcaaggcccgggccgaggaaccgcgcctgcgcgaa
gccgcgcgggaagaggtgatcggacgcctgctggattacgccgaaaagctggaggggctg
tatcgcaatgcctcgacccatgcggcgggggtggtgatcggggatcgtccgctggaccag
ctggtgccgctgtaccgcgatccggcctcggacatgcctgcgacgcagttcaacatgaaa
tgggtcgagcaggccggactggtcaaattcgactttctgggcctgaaaaccctgaccgtg
atccagaacgccgtcgatctgatcaatggcggcgggcgtccgctgcatgtcgcggccgat
ggcaggcagctctatgaaccgccggaaggggcggaaaaccagatcaatgccatcccgctg
gatgacaaggccagctacgatctgttcgcctgtgcccgcaccgtggccgtgttccaggtg
gaatccagcggcatgatggacgcgctgcggcggatgcggcccacctgtatcgaggatatc
gtggcacttgtggcgctgtatcgtcccggcccgatggaaaacatcccgacctattgtgag
gtgaagaacgggcagcgcgacctgcaacccttgcatcccagcatcgaccacatccttgag
gaaacccagggcatcatcgtctatcaggaacaggtgatgcagattgcgcaggtcatggcc
ggctacagccttggcggcgcggatctgctgcgccgtgcgatgggcaagaagatcgccgag
gaaatggccaaggaacgtccgaaattcgtcgatggcagcgtggccaatggcgtggatgcg
aaaaaggcgggcgaggtctttgacctgctggaaaaattcgccaattacggcttcaacaaa
tcccacgcggcggcctatgccgtggtcagctatcagaccgcctggctgaaggccaatcac
ccggtcgaattcatggcggcggtgatgaattgcgatatccacctgaccgacaagctggcc
atctacaagcgcgaggtggatcggatggggatcgagatcgtgccgccctgcgtcaaccgc
tcggccccgaaattcaccgtgaaggacgggcgcatccactatgcgcttggcgcgctgaaa
ggggtggggctggaggcgatgcgcctgatccacgaggcgcgtgtttcgcccgagggcgag
gatcgccccttccgtgacatgaacgattttgcccggcgcgtcgatatgaagcgggtaggc
aaacgcccgctggaaatgctggcgcgggccggggcctttgacgtgctggacgataatcgc
tctcgcgtgctgaaatcgctggacgggctggtggcctggtctgcggcggtgcaggaacag
gcggcctcgaaccagtccagcctgttcggcgggggcgaggatctgccaccgccgcgcccg
ccgatggcgcaggtctggctgcccaccgaaaagctgggcgaagaacatcgcgccgtcggc
ttctatctgtccggccatccgatcgacgattacctgcccgcgctgcgccgcaagaaggtg
cagaccctggccgaaatcacggctgaggccgagggcggcccgctggtcaccagcatcgca
ggcacggtctcggcccggcaggaacggaagtcggccaagggcacgcaatatgcctttgtc
agcctgtccgatccgaccgggctttacgaggtgacggtcttttccgatctgctgaacgcc
gcccgcgaccggctggagccggggcagaatgtcgtgctgcaggtcaaggtcgagccgtcg
ggcgatcaggtcaagatgctggccaattcggtcacgccgctggaagatgccgttgcggat
gcgggggcgggctgtctggcggtggaaatgcagggcgcggataccatcccccgcctggcc
gagacgctggagcggatcaaatccgatatcgcggcctcgtcccgcagccgtggtccggtt
ctgctgcgcatccgcgaaggcgatgagttgatcgagatcgaggtcgccaatgacacgccg
ctgaccacacccgcccggcaggcgctgcgggcggtgcccggtgtgctggacgtgatcgag
gaatag
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integrated database retrieval system
