Paracoccus fistulariae: JHX87_15380
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Entry
JHX87_15380 CDS
T08856
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfis
Paracoccus fistulariae
Pathway
pfis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JHX87_15380 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfis03021
]
JHX87_15380 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfis03400
]
JHX87_15380 (rpoB)
Enzymes [BR:
pfis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JHX87_15380 (rpoB)
Transcription machinery [BR:
pfis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JHX87_15380 (rpoB)
DNA repair and recombination proteins [BR:
pfis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JHX87_15380 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WCR06834
UniProt:
A0ABY7SIV5
LinkDB
All DBs
Position
3103880..3108025
Genome browser
AA seq
1381 aa
AA seq
DB search
MAQAYVGQKRIRRYYGNIREVLEMPNLIEVQKSSYDLFLNSGEGAGHHDGEGIQGVFQSV
FPIKDFNETATLEFVKYELEHPKYDVDECQQRDMTYAAPLKVTLRLIVFDVDENTGAKSV
KDIKEQDVFMGDMPLMTQNGTFVVNGTERVVVSQMHRSPGVFFDHDRGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGMDQEGIMDAFYDTVDYSLRR
SGREQGWVTKFFPERVRGTRPAYDLINADTGEVITKAGDKVTPRLVKRLLESGEQVNLLV
PFERIIGRFVAKDIINEETGLIYAEAGDEITAEYDKDGELNGGLLKVLLDNDITDIPVLD
IDHVNVGPYIRNTMAADKNMNREQALTDIYRVMRPGEPPTVEAASTLFNSLFFDAERYDL
SAVGRVKMNMRLDLDAPDTQRTLRPEDIVACIRGLVELRDGKGEIDDIDHLGNRRVRSVG
ELMENQYRVGLLRMERAIRERMSGVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQ
TNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLAT
FARVNKYGFIETPYRKVIEGKVTDDVVYMSATEEMRHTVAQANAELDNDGKFVQELVSTR
QAGDFMLNPVDAVDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEA
PFVGTGMEAIVARDSGAAIMARRGGIIDQVDAQRIVIRATEDLGAGDAGVDIYRLRKFKR
SNQSSTINQRPLVKVGEKVVKGQVVADGPSTDQGELAIGRNVVVAFMPWNGYNYEDSILI
SERIHRDDVFTSIHIDEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVG
PGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHG
VDKDERALQIEREEVERLARDRDDEQAILDRNIYARLKTLILGKTAVKGPKGVKSNSEVT
EDLLGTLSRGQWWQLAVSEEEIAKEVEALHQQYDNQKKALEARFEDKVEKVRQGDDLPPG
VMKMVKVFVAVKRKLQAGDKMAGRHGNKGVVSKVVPMEDMPFLADGTPVDLVLNPLGVPS
RMNVGQILEAHMGWASRGLGVKIDEALEDYRRSGDMTPVREAMKNGYGDELYAENFAEMD
DETLVEHANTVRTGVPIATPVFDGAKEADINDALKRAGFDTSGQSIVFDGRTGEQFARPV
TVGAKYVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAY
TLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEE
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagcttatgtcggccagaagcgtatccggcgctactatggcaacatccgcgaa
gtattggaaatgccgaaccttattgaggttcagaaatcctcttacgacctgttcctgaat
tccggcgaaggtgccgggcatcacgacggcgaagggatccagggcgttttccagtctgtt
ttcccgatcaaggatttcaacgagaccgcaacgcttgagttcgtgaaatacgaactggag
catccgaaatatgacgttgacgaatgccagcagcgcgacatgacctatgccgccccgctg
aaggtcacgctgcgtctgatcgtgttcgatgtcgatgaaaacaccggcgcgaaatcggtc
aaggatatcaaggagcaggacgtcttcatgggcgacatgcccctgatgacccagaacggc
acgttcgtcgtgaacgggaccgagcgcgttgtcgtgtctcagatgcaccgttcgccgggc
gtgttctttgaccatgaccgcggcaagacgcacagctcgggcaagctgctgttcgcctgc
cggatcattccctatcgcggctcgtggctggatttcgaattcgacgccaaggatctggtc
ttcgcgcgcatcgaccgccgccggaaattgccggtgacgacgctgctctatgccctgggc
atggatcaggaaggcatcatggatgcgttctacgacacagtggattattcgctgcgccgc
tcgggacgtgagcagggctgggtcaccaagttcttccccgagcgcgtccgtggcacccgt
ccggcctatgacctgatcaatgccgacactggcgaggtcatcaccaaggctggcgacaag
gtcaccccgcgtctggtcaagcgtctgctggaatcgggcgagcaggtgaacctgctggtt
ccgttcgagcggatcatcggccgctttgtcgccaaggatatcatcaacgaggaaaccggc
ctgatctatgcagaggccggcgatgagatcacggcggaatatgacaaggatggcgagctg
aacggcggcctgctgaaggttctgctggacaatgacatcaccgatatcccggtgctggac
atcgaccacgtgaatgtcggcccctacatccgcaacaccatggctgcggacaagaacatg
aaccgcgaacaggcgctgaccgatatctatcgcgtcatgcgtccgggtgagccgccgacg
gtcgaggccgcctcgaccctgttcaacagcctgttctttgatgccgagcgttatgacctg
tccgccgtgggccgggtcaagatgaacatgcgcctggatctggatgcgcccgatacgcag
cgcacgctgcgccccgaggatatcgtggcctgtatccgtggcctggtcgaattgcgcgac
ggcaagggcgagatcgacgatatcgaccatctgggcaaccgtcgcgtccgttcggtcggc
gaattgatggaaaaccagtatcgcgtcggcctgctgcgcatggagcgcgccatccgcgag
cgcatgtcgggtgtcgagatcgacaccgtcatgccgcaggatctgatcaacgccaaaccg
gccgcggcggcggtgcgtgaattcttcggctcgtcgcagctgtcgcagttcatggaccag
accaacccgctgtccgaggtgacgcataagcgtcgtctctcggcgcttgggccgggcggt
ctgacccgcgaacgtgccggcttcgaggtgcgcgacgttcacccgacccattacggtcgg
atgtgcccgatcgaaacgccggaaggtcagaacatcggtctgatcaacagcctcgccacc
tttgcccgtgtgaacaaatacggctttatcgagacgccttatcgcaaggtgatcgagggc
aaggtgaccgacgacgtggtctatatgtccgcgaccgaggagatgcgtcacaccgtggcg
caggccaatgccgagctggataacgacggcaaattcgttcaggaactggtcagcacccgt
caggcgggcgatttcatgctgaacccggtcgatgccgtcgatctgatcgacgtgtcgccg
aagcagctggtctcggtcgctgccgcgctgatccccttcctggaaaatgacgacgccaac
cgcgctctgatggggtcgaacatgcagcgtcaggcggtgccgttgctgcgtgccgaggcg
ccctttgtcggcaccgggatggaggccatcgtggcccgcgattccggcgccgccatcatg
gcgcgtcgtggcgggatcatcgaccaggtggacgcccagcgcatcgttatccgggccacc
gaagatctgggtgcgggcgacgcgggcgtggacatctatcgtctgcgcaagttcaagcgt
tcgaaccagtcctcgaccatcaaccagcgtccgctggtgaaggtgggtgagaaggtcgtc
aagggtcaggttgtggccgacggtccctcgaccgatcagggcgaactggccatcggtcgg
aacgtggtcgtcgccttcatgccctggaacggctacaactacgaagactcgatcctgatc
tccgagcggatccaccgcgacgacgtgttcacctcgatccatatcgacgaatacgaagtg
gcggcccgcgataccaagctgggtccggaagaaatcacccgcgacatcccgaatgtcggt
gaagaggcgctgcgcaaccttgatgaggccggcatcgtctatatcggcgccgaggtcgga
ccgggcgatattctggtgggcaagatcacccccaagggcgaaagcccgatgacgccggaa
gaaaagctgctgcgcgccatctttggtgaaaaggcctcggatgtccgcgatacctcgctg
cgtctgccgccgggtgcttacggcaccatcgtggaagtccgtgtcttcaaccgtcacggt
gtggacaaggacgaacgcgcgctgcagatcgagcgtgaggaagtcgagcgtctggcacgt
gaccgcgacgacgaacaggcgatcctggaccgcaacatctatgcgcgtctgaaaacgctg
atcctgggcaagaccgccgtgaagggtccgaagggcgtcaagtccaattcggaagtgacc
gaagatctgctgggcacgctgagccgtggtcagtggtggcagcttgccgtcagcgaagaa
gagatcgccaaggaagtcgaggcgctgcatcagcaatacgacaaccagaagaaggccctg
gaagcccgcttcgaagacaaggtcgagaaagtccgtcagggcgacgacctgcctccgggc
gtgatgaagatggtcaaggtctttgtcgccgtgaagcgcaagctgcaggccggtgacaag
atggccggtcgtcacggcaacaagggtgtcgtgtcgaaggtcgtgccgatggaagacatg
cccttcctggccgatggcacccccgtcgatctggttctgaacccgctgggcgtgccgtcg
cgcatgaacgtcggtcagattctggaagcgcatatgggctgggcatcgcgcggtcttggc
gtcaagatcgacgaggcgctggaagattatcgccgcagcggcgatatgaccccggtccgc
gaggcaatgaagaacggctatggcgatgagctttatgccgagaactttgccgagatggat
gacgaaaccctggtcgagcacgccaataccgtgcgcaccggcgttccgatcgccacgccg
gtcttcgacggtgccaaagaggccgatatcaatgacgcgctgaagcgcgcgggctttgac
acatcgggtcagtcgattgtcttcgacggtcgcacgggcgagcagtttgcgcgtcccgtt
acggtcggcgcgaaatatgtcctgaagctgcatcaccttgtcgatgacaagatgcacgca
cgctcgaccgggccgtattcgcttgtcacccagcagccgctgggcggtaaggcgcagttc
ggtggtcagcgtctgggtgagatggaggtctgggccttggaagcttacggcgccgcttac
accctgcaggaaatgctgacggtgaaatcggatgacgtggccggccggacgaaggtctat
gaatccatcgtcaagggcgaggacaacttcgaagccggtgtgccggaatccttcaacgtg
ctggtcaaagaggtccggggtctgggcctcaacatggaactcctggatgcggaggaagag
gagtaa
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integrated database retrieval system
