Paracoccus fistulariae: JHX87_16965
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Entry
JHX87_16965 CDS
T08856
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfis
Paracoccus fistulariae
Pathway
pfis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JHX87_16965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfis03019
]
JHX87_16965
Enzymes [BR:
pfis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JHX87_16965
Messenger RNA biogenesis [BR:
pfis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JHX87_16965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Helicase_RecD
ERCC3_RAD25_C
DUF7069
Motif
Other DBs
NCBI-ProteinID:
WCR09121
LinkDB
All DBs
Position
complement(3441002..3442234)
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AA seq
410 aa
AA seq
DB search
MGIDERINANIAAMGLTDPTPIQTQAIPSIVEGRDVLGLAQTGTGKTAAFGLPMLTRLIK
FGKKPEPRTCRALILAPTRELATQIAQNIDAYAEGTPIRSYRVVGGASINVQTERLSRGV
DVLIATPGRLMDLIERRAISLEAATYLVLDEADQMLDIGFIHTLRKIAKMLPKQRQTLLF
SATMPKLMSELADTYLTDPVKVQVNPPGQAAKKIDQGVHFTTQGDKAALLAEYLSKHPGE
LAMVFGRTKYGSEKLAKLLDKWGFAVAAIHGNKSQGQRERALDAFRKGDTQILVATDVAA
RGLDIPAVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCAPAEVGELRAIEKAMKA
AIPVIGGEAPAMPQQPSRGQRGRGGKPQDGGNKRPARRPSRRPKSQKAKA
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgggcattgacgaacggatcaacgccaatatcgccgccatgggcctgaccgacccgacg
ccgatccagacgcaggcaatcccctcgatcgtcgaggggcgcgatgtgttgggcctggcc
cagaccggcacgggcaagacggcggcctttggcctgccgatgctgacccggctgatcaaa
ttcggcaaaaagcccgaaccgcgcacctgccgcgcgctgatccttgcgccgacgcgcgaa
ttggcgacgcagatcgcgcagaatatcgacgcctatgccgaaggcacgccgatccgcagc
tatcgcgtggtgggcggggcttcgatcaatgtccagaccgagcgtttgtcgcgcggcgtg
gatgtgctgatcgcgacgccgggccgcctgatggacctgatcgagcgccgcgcgatcagc
cttgaggccgcaacctatctggtgctggatgaggccgaccagatgctggatatcggcttt
atccacacgctgcgcaaaatcgcgaagatgctgccgaagcagcgccagacgctgctgttc
tcggccaccatgccgaagctgatgtcggaactggccgatacctatctgaccgatccggtc
aaggtacaggtgaaccctccgggacaggctgccaagaagatcgatcagggcgtgcatttc
accacccagggcgacaaggcggccttgctggcggaatatctgtccaagcatccgggcgag
ctggccatggtctttggccgcaccaaatatggcagcgagaagctggccaagctgctggat
aaatggggctttgcggtcgcggcgatccatggcaacaaaagtcagggtcagcgcgaacgg
gcgctggacgccttccgcaagggcgacactcagatcctggtggccacagatgtggccgcg
cgcggtctggatattccggcggtggcgcatgtctataactacgacctgccgaacgtgccg
gaaaactatgtccaccgcatcggtcgcaccgcgcgcgcaggccgcgacggccgtgccgtc
gccttttgcgcgccggcagaggttggcgaattgcgagccatcgaaaaggcgatgaaggcc
gcgatcccggtgatcggcggcgaggcgccagcgatgccccagcaaccatcgcgcggtcag
cgtgggcgcggcggcaagccgcaggatggcggcaacaagcgtccggcacgtcgcccctcg
cgccgccccaaaagccagaaggcaaaagcataa
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