Pseudomonas fitomaticsae: KJY40_03735
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Entry
KJY40_03735 CDS
T08740
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJY40_03735 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfit03019
]
KJY40_03735 (rnr)
03016 Transfer RNA biogenesis [BR:
pfit03016
]
KJY40_03735 (rnr)
Enzymes [BR:
pfit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KJY40_03735 (rnr)
Messenger RNA biogenesis [BR:
pfit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KJY40_03735 (rnr)
Transfer RNA biogenesis [BR:
pfit03016
]
Prokaryotic type
tRNA degradation factors
KJY40_03735 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM
TRAM_2
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
UFQ00812
LinkDB
All DBs
Position
853740..856370
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AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAGKLKPEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEVKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEGRKLRGEYTDVLP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSAQNEGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAESTAPAAKVVEEKAPAK
TASRRPAKEKVAEAYRPSDAVAKNAELRKSREMKKALLADAKNGGKAASGGKTGRSAPEK
ASGGKPAKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcccagccgcgaactgatccttcagcaccttgctgatcggggttcgcctgctgcc
cgcgagcaactggtcgaagagtttggtctgaccacagaagaccagatcgaagccctgcgc
cgccgcctgcgcgccatggagcgcgacgctcaactgatctatacccgccgtggcacgtat
gcgccggtggacaagctcgatctgatcctcggtcgcatcagtggtcaccgcgacggcttc
ggcttcctggtgccggatgacggttccgacgacctgttcatgagcccggcgcaaatgcgt
ctggtgttcgacggcgaccgtgcactggcccgtgtttccggtctggatcgtcgcggtcgt
cgcgaaggcgtgatcgttgaggtggtgtcccgtgcccacgaaagcatcgtcggccgctac
ttcgaagaaggcggtatcggcttcgtcgtcgcggacaatccgaaaatccagcaggaagtg
ctggtcaccccgggccgcaacgccaacgcccagatcggtcagttcgtcgaggtgaaaatc
acccactggccgactccgcgcttccagccgcaaggcgacgtgatcgaagtggttggcaac
tacatggcgccgggcatggaaatcgatgtcgccctgcgcacctacgacattccgcacgtc
tggcctgaagccgttctgaaggaagccggcaagctcaagccggaagtcgaagagaaagac
aaagagaagcgcgtcgatctgcgccatctgccgttcgtcaccattgacggcgaagatgcc
cgcgacttcgacgacgcggtctactgcgaagtcaagccaggcaagctgcgcctgttctcc
ggtggctggaagttgtacgtggcgattgccgacgtttccagctacgtgaagatcggttcg
gctctggacaacgaagcccaggttcgcggcaactcggtgtacttccccgagcgcgtggtg
ccgatgctgcccgagcaactctccaacggcctgtgctcgctgaacccgcacgttgatcgt
ctggccatggtttgcgagatgaccatctccaagtccggcgaaatgaccgactactgcttc
tatgaggcggtgatccattcccacgcccgtctgacctacaacaaggtcagcgcgatgctg
gaaacgccgaaggctaccgaagggcgcaagctgcgcggtgaatacaccgacgtcttgccg
cacctcaagcagctttacgcgctgtacaaggtattgctggctgcccgtcacgtgcgtggc
gcgatcgatttcgaaacgcaggaaacccggatcatcttcggttccgagcgcaagattgcg
gaaatccgtccgactacccgtaacgacgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgaattcctgaagaagcacgaaatccctgcgctgtaccgcgtc
cacgacggcccgccaccggagcgtctggaaaaactgcgtgcgttcttgggtgagctcggt
ctgtccctgcacaaaggcaaggatggcccatcgccgaaggactatcaggccctgttggcc
agcatcaaggaccgtccggatttccacctgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgcccagaacgaaggtcacttcggcctgaattacgaagcctatacc
cacttcacctcgccgatccgtcgttacccggacctgctcacgcaccgggcgatccgcagc
gtgatccattcgaaacaggacaccccgcacgttcgccgtgccggtgcgatgaccattccg
aaggcgcgcatctatccgtacgacgaagcagcgctggaacaactcggcgagcagtgctcg
atgagcgagcgccgtgccgacgaagcgacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgtgtgggcgaatcgttcccgggtgtgatcactgccgtgaccggtttt
ggcctgttcgtcgagctgaccgatatttacgtcgaaggtctggtccacgttaccgcgctg
ccgggcgattactaccacttcgaccctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgtcttggcgatactgttgaagtgcgcgtcatgcgtgtcgatctcgacgag
cgcaagatcgacttcgagatggcggaaaaaaccatcagcgcgccgatcggccgcaagaag
cgtggcgccgagtcgaccgctccagcggccaaggttgtggaagagaaggctccggcaaaa
accgccagccgtcgtccggccaaggaaaaggtggccgaggcttatcgcccgagcgatgcc
gtggcgaaaaacgccgagctgcgcaaaagccgtgaaatgaagaaggccttgctggccgac
gccaaaaacggtggtaaagcggcgtccgggggaaagaccggacggtcggcgcctgaaaag
gcctccggcggcaagccagccaaaccgagcaaacaccgtaaaggcccgccaaaagcgggt
tccgctccagccaaaagtggcggggcgcgtaaaccgaaggcgaagtcatga
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