Pseudomonas fitomaticsae: KJY40_05045
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Entry
KJY40_05045 CDS
T08740
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJY40_05045 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfit03019
]
KJY40_05045 (pnp)
03016 Transfer RNA biogenesis [BR:
pfit03016
]
KJY40_05045 (pnp)
Enzymes [BR:
pfit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KJY40_05045 (pnp)
Messenger RNA biogenesis [BR:
pfit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KJY40_05045 (pnp)
Transfer RNA biogenesis [BR:
pfit03016
]
Prokaryotic type
tRNA degradation factors
KJY40_05045 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
UFQ01057
LinkDB
All DBs
Position
1154893..1156998
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQAASSLDMVV
AGTSDAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPAPEA
TELLAAIRSEFGEAISQAYTITIKADRYARLGELRDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVSAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtagtcggtgccaagcaagccgatccgggcaagggcttcttccctctgtcc
gttcactaccaggaaaagacctacgctgccggcaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccggaaggtttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgccctggcgatc
tccggcattccgttcgacggcccgatcggcgccgcccgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacctacgagcagcaagctgcctcgagcctggacatggttgtt
gccggtacttcggacgccgtgctgatggttgagtcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgtttgctcacgacgagttccaggtcgtaatcaacgccgtt
aaagaactggctgccgaagcggccaagccaacctggacctgggcacctgctccagaagcc
accgagctgctggccgctatccgttccgagttcggcgaagcgatctcccaggcttacacc
atcaccatcaaggccgaccgttatgcgcgtctgggcgagctgcgtgaccaggtcgtagcc
aagctgtccggtgaagaaggccagccttcggcttccgacgtcaaagccgctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgc
gacacccgcaccgtacgtccgctgaacatcgaagtcggcgttctgccgaagacccacggt
tcggcactgttcacccgtggtgaaacccaggctctggtcgtcgcgacgctgggcactgcc
cgtgacgcgcaactgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgccggtcgtcgt
gaaatcggtcacggccgtctggcccgtcgttcggtttcggcgatgctgccagccgctgac
gtgttcccgtacaccatccgtgtggtttcggaaatcaccgaatccaacggttcgagctcg
atggcttccgtttgcggcgcttccctggccctgatggacgctggtgttccgatgaaggca
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaagttcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgctctgggccaggccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcatcggccagtcgcgtaccgaactgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgttatcggtaaaggtggcgcgaccatccgtgcgatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggttcgatcaagatcttcggc
gaaaccaaggaagccgctgaagcagcacgtcagcgcgttctgggtatcaccgcagaggcc
gagatcggcaagatctacgtcggcaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgccgggcaaggacggtctggttcacatctcgatgctgagcgacgctcgcgta
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtggcagccgccaaggcttcgggc
gtttaa
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