Pseudomonas fitomaticsae: KJY40_05435
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Entry
KJY40_05435 CDS
T08740
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit02020
Two-component system
pfit02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KJY40_05435
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KJY40_05435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfit03021
]
KJY40_05435
Transcription machinery [BR:
pfit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KJY40_05435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
DUF4741
RRP4_S1
TrmO_C
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UFQ01131
LinkDB
All DBs
Position
complement(1248251..1249744)
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSD
PMADNAEQKPNTEIQEPSYQETAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLP
SSDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LDAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLSARTPWLTEAKRLV
TDYIDLLGSRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNAQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggatctgcaacaggaaatccaggaggct
ctggaatccaatccgatgctcgaacgccaggaagacggcgacgacttcgacaactccgat
cccatggccgacaacgccgaacagaagcccaacaccgagatccaggaaccctcctatcag
gagaccgcgccgacagtcgacaacctcgaagacggcgaatggaacgagcgaatccccaac
gaactgcccgtcgacaccgcctgggaagacgtctatcagaccagcgccagcagcctgccc
agcagcgacgatgacgagtgggatttcactacccgcacctccgccggcgagagcctgcaa
agccaccttttgtggcagttgaacctggcaccgatgtccgacaccgatcgcctgatcgcc
gtcaccctgatcgattgcatcaacaatcagggctacctcgacgaaaccctcgaagaaatc
ctcgacgccttcgatccggaactcgacatcgagctggacgagatcgaagccgtcctgcac
cgcatccagcaattcgaaccggccggcatcggcgcacgcaacctgggcgaatgcctgctg
ctgcaattgcgccagctgtcggccaggaccccttggctgaccgaggccaagcgtctggtc
accgattacatcgatttgctcggcagccgcgactacagccagctgatgcgccgcatgaag
ctcaaggaagacgaactgcgccaggtcatcgaactggtacagagcctcaacccgcgtccc
ggttcgcagatcgaatccaccgaagccgaatacgtggtacctgacgtcatcgtgcgcaag
gacaacgagcgctggctggtcgaactgaaccaggagtcggtgccgcgtctgcgggtcaac
gcccagtacgccggtttcgtgcggcgtgccgacaccagcgccgacaacaccttcatgcgc
aatcagttgcaggaagcccgctggttcatcaagagcctgcagagccgcaacgaaaccctg
atgaaagtggccacccagatcgtcgagcatcagcgcggttttctggagtacggcgacgaa
gccatgaagccgctggtcctgcatgacatcgctgaagccgtgggcatgcacgagtcgacg
atttcccgggtgaccacacagaaattcatgcataccccacggggcatatatgaactgaaa
tactttttctccagccatgtgagcacttccgaaggcggtgaatgctcgtccacggcgatc
cgcgcgatcatcaagaaactggttgccgcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggcattcaggtggctcgccgcaccgtcgccaag
taccgcgaatccctcgggatcgcgccttcgagcgaacgcaagcggttgatgtaa
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