Pseudomonas fitomaticsae: KJY40_08530
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Entry
KJY40_08530 CDS
T08740
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pfit
Pseudomonas fitomaticsae
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfit03009
]
KJY40_08530
Enzymes [BR:
pfit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJY40_08530
Ribosome biogenesis [BR:
pfit03009
]
Prokaryotic type
rRNA helicases
KJY40_08530
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UFQ01723
LinkDB
All DBs
Position
1897517..1898857
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AA seq
446 aa
AA seq
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MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM
LFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKTAAKTPTKRKSANR
PKPDALVSSDGMAPLKRRKPAAPAAE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagctgaaattt
gtcgagccaacgcctgtgcaagccgcggccattccgctggcgcttcaggggcgtgacctg
cgggtgacggcgcaaaccggtagcggcaagaccgccgcttttgtcctgccgatcctcaac
cgcctgatcggtccggccaagatccgcgtcagcatcaagaccctgatcctgctgccgacc
cgtgaactggcccagcagaccctgaaggaagtcgagcgcttttcgcagttcactttcatc
aagtccggcctgatcaccggcggtgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggacatcctgatcggcaccccgggccggatgatcgagcaactgaacgccggcaac
ctcgacctcaaagaagtcgaagtgctggtgctcgacgaagccgaccgcatgctcgacatg
ggtttcgccgaagacgtacagcgtctggtcgacgaatgcccgaaccgtcagcagaccatg
ctgttctccgccaccactggcggttccggcctgcgcgagatgatcgccaaggtgctgaac
aaccctgagcacttgcagctcaacgcggtcagccagctgaacgacaccacccgtcagcag
atcattaccgccgaccacaaccagcacaaagaacagatcgtcaactggctgctggccaac
gagacctatcagaaggccatcgtcttcaccaacacccgggccatggccgaccgcatttac
ggtcgcctcgtcgcccaggaatacaaggcgtttgtgctgcacggcgagaaagaccagaag
gaccgcaaactggcgatcgaccgtctgaagcagggcggcgtgaagatcctggtggccacc
gacgtggcggcccgtggtctggacgtcgacggcctggatctggtgatcaacttcgacatg
ccacgcagcggcgacgaatacgtgcaccgtatcggtcgtaccggccgtgccggcaacgac
ggcctggcgatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgagcgc
tatctgaagcagagtttcgagcgccgcaccatcaaggaagtcaaaggcacctacggcgga
ccgaaaaaggtcaaggcctcgggcaaggccgtcggtgtgaagaagaaaaagaccgacgcc
aagggcgacaagaagaaaaccgccgccaagactccgaccaagcgcaagagtgccaaccgt
ccgaagccggacgcattggtgagcagcgacggtatggccccgctgaaacgccgcaagccg
gcagcgccagcggctgaataa
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