Pseudomonas fitomaticsae: KJY40_15170
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Entry
KJY40_15170 CDS
T08740
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KJY40_15170
09124 Replication and repair
03420 Nucleotide excision repair
KJY40_15170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfit03021
]
KJY40_15170
03036 Chromosome and associated proteins [BR:
pfit03036
]
KJY40_15170
03400 DNA repair and recombination proteins [BR:
pfit03400
]
KJY40_15170
Enzymes [BR:
pfit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
KJY40_15170
Transcription machinery [BR:
pfit03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KJY40_15170
Chromosome and associated proteins [BR:
pfit03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
KJY40_15170
DNA repair and recombination proteins [BR:
pfit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KJY40_15170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
UFP97424
LinkDB
All DBs
Position
3396223..3398541
Genome browser
AA seq
772 aa
AA seq
DB search
MSYSIAVRALCEFTAKTGDLDLRFTPSPTALEGIAGHRTVASRRNDAYQSEVALEGAFGP
LKVKGRADGYDPTQNCLEEVKTYRGDLSKQPANHRSLHWAQAKIYGWLMCCRLQLEQINL
ALVYFDIVTEKETCLVEAFSADALRQFFEQQCGLFLAWAEQEMAHREARNRAAQQLGFPH
AAFRPGQRHLAESVFKAVSTGRCLMAQAPTGIGKTLGTLFPMLKALAPQQLDKVYFLTAK
TPGRKLALDAAQVLFDHSETLPLRVLEMVARDKACEHPDKACHGESCPLAQGFYDRLPAA
RAAASQLRLLDQAALRDVAAQHGVCPYYLSQEMARWADVVVADYNYYFDFSALLFGLAQF
NQWNVAVLVDESHNLVERGRQMYSATLDQATLGSVRKTAPEALKKSLQRVNREWNALHND
QLAPYQAYDKAPEKLLQALSSCTASIGDYLNDHPQGLDSALQNFYFEMLQFGRVAELFDA
HYLFDISKRDLERKRPLSQLCLRNVVPAAFIGPRLTAARSSVLFSATLSPRHYYADLLGT
PADTVWIDVESPFSAEQLQVQIVSRISTRFTHRQASLEPIVELIARQFSERPGNYLAFFS
SFDYLQQVAQLLAERHPHITRWQQSRGMTEGARQDFLDQFTADSQGVGFAVLGGAFGEGI
DLPGARLIGAFIATLGLAQLNPVNEQMKRRMAAIFGAGYDYTYLFPGVQKVVQAAGRVIR
TQQDRGVVMLIDDRFAESRIRQLLPRWWQPDLSEAPFQTAGLTHTPVIEKLF
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
ttgagctacagcatcgcggtgcgggcgctgtgcgaattcaccgcgaaaaccggtgacctc
gacttgcgcttcaccccgtcaccgaccgcgctggaggggattgccgggcatcgcaccgtg
gcgtcccggcgcaacgacgcctaccagagcgaagtggcgctggagggcgcattcggaccg
ttgaaggtcaagggcagggcggacggctacgacccgacgcagaactgcctggaagaagtc
aaaacctatcgcggtgatttgagcaagcaaccggccaatcaccgctcgctgcattgggcc
caggcgaaaatctacggctggttgatgtgctgtcgtttgcagcttgagcagatcaatctg
gcgctggtgtatttcgacatcgtcacggaaaaggaaacctgtctggtcgaagcgttcagc
gccgatgcgctgcggcagttcttcgaacaacagtgcggtttgttcctggcgtgggccgaa
caggaaatggcccaccgcgaagcgcgcaaccgggcggcgcagcaactggggttcccccat
gccgcgtttcgccctggccagcgtcatctcgccgaatcggtgttcaaggctgtcagcacc
ggccgctgcctgatggcccaggccccgaccgggatcggcaagaccctcggcaccctgttt
ccgatgctcaaggcgttggcgccgcagcaactggacaaggtctacttcctcaccgccaag
acccccggacgcaaactggcgctggatgcggcgcaagtgctgttcgatcacagcgaaacc
ttgcccctgcgagtactggaaatggtcgcccgggacaaggcctgcgaacacccggacaag
gcctgccacggcgaatcctgcccgttggcccaaggcttttacgatcgcttgcccgctgcc
cgcgcagccgccagccaattgcgtctgctggatcaggccgcgctgcgagacgtcgcggcg
cagcacggggtgtgcccgtactacctgagccaggaaatggcccgctgggccgacgtggtg
gtggcggactacaactattacttcgatttcagcgcgctgctgttcggtctggcccagttc
aatcaatggaacgtcgcggtgctggtggacgagtcgcacaacctggtcgagcgcggacgg
cagatgtacagcgccaccctcgatcaggcgacactgggcagcgtgcgcaaaaccgccccc
gaggccttgaagaagtcgttgcaacgggtcaaccgcgaatggaacgccctgcacaatgac
cagttggcgccgtatcaggcctacgacaaggcgccggaaaaactgttgcaggcgctctca
tcctgtacggcgagcattggcgactacctcaacgatcacccgcaagggctcgacagcgcg
ttgcagaacttctatttcgaaatgctgcaattcggccgcgtggcggaactgttcgacgcg
cattacctgttcgacatcagcaaacgcgacctcgagcgcaaacgcccgttatcgcaactg
tgcctgcgcaacgtggtgccagcggcgttcatcggcccgcgcctgacggcggcgcgcagc
agcgtgctgttttccgcaaccctcagcccgcgccactattacgctgatttgcttggcacg
ccggccgacacagtgtggatcgatgtcgagtcgccgttcagcgccgagcaattgcaggta
cagatcgtcagccggatttccacgcgtttcacgcaccgtcaggcatcactggaaccgatt
gtcgagctgatcgcccgccagttcagcgaacgtccgggcaactatctggcgttcttcagc
agtttcgattacctgcaacaggtcgcgcagttgctggcggagcggcacccgcacatcacc
cgctggcagcaatctcgaggcatgaccgaaggggcgcgccaggatttcctcgatcaattc
accgccgacagccagggcgtcggctttgccgtgctcggcggcgcgttcggcgaaggcatc
gatctgcccggcgcacggctgatcggcgcgttcatcgcgaccctcgggctggcccagctc
aacccggtcaatgaacagatgaagcggcgcatggccgcgatctttggtgccggttacgac
tacacctacctgttccccggcgtgcagaaagtggtacaggccgccggacgggtgatccgc
acgcagcaggatcgcggcgtggtgatgctgatcgacgatcgctttgccgaaagtcgcatc
cggcaattgctgccgcgctggtggcaacctgatctctcagaagcacctttccaaaccgcc
ggtttgacgcatactccagtgattgaaaaactgttttga
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integrated database retrieval system
