Pseudomonas fitomaticsae: KJY40_20645
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Entry
KJY40_20645 CDS
T08740
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJY40_20645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfit03019
]
KJY40_20645
03009 Ribosome biogenesis [BR:
pfit03009
]
KJY40_20645
Enzymes [BR:
pfit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJY40_20645
Messenger RNA biogenesis [BR:
pfit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KJY40_20645
Ribosome biogenesis [BR:
pfit03009
]
Prokaryotic type
rRNA helicases
KJY40_20645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
UFP98441
LinkDB
All DBs
Position
complement(4621792..4623465)
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AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctgcaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtgactgttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtgctgcagaccgtgaaccacctggttctcgacgaagcagacgaa
atgctcaaactgggcttcatggacgacctcgaagtcatcttcaaggccatgccggaaacc
cgtcagaccgtattgttctcggcgaccctgccgcaatcgatccgtgccatcgccgagcgt
cacctgcgcgatccaaagcatgtgaagatccagagcaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctctgccgttctcagcttgctg
gaagtggaagatttcgacgctctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagcgccctcgacgccaaaggctacaaagccgccgcgttgaacggcgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctgaaagatggccgtctggacatcgttgtg
gcgaccgacgttgccgcccgtggtctggacgttccgcgcatcacccacgttttcaacgtg
gacatgccgtacgatccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgcgcgctgctgctggtgactccgcgtgagcgccgcatgctgcaggtaatc
gagcgtgtgaccggtcagaaagttgccgaagtgcgtctgccggacgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtggctgacgccgaatcg
actcacggtgacctgctggatcgcctgaccgccgacatcggttgcaccccgcgtgccctg
gctgccgcactgctgcgcaaagccaccaatggtcaggcgctgaacctggcagcgatcgag
aaggaacgtccactggtgccgaacagcgcgccacgtggcgaccgtcctgagcgttcgggt
gatcgtccggaccgtggtgaccgcgagcgtcgtgcgccaatgcctttgggtgaaggccgt
gcccgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggcgaaaaacctgctgggc
gccatcctcaacgaaggtggtctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggacaaactcctgaccaaattgaag
gacactcgcgttgccggcaaacagctgaaactgcgtcgctaccgcgaagattga
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