Pseudomonas fitomaticsae: KJY40_22710
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Entry
KJY40_22710 CDS
T08740
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pfit
Pseudomonas fitomaticsae
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfit03009
]
KJY40_22710 (rlmD)
Enzymes [BR:
pfit01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KJY40_22710 (rlmD)
Ribosome biogenesis [BR:
pfit03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KJY40_22710 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
TRAM
MTS
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_23
PCMT
Methyltransf_15
Methyltransf_12
Methyltransf_4
PrmA
DREV
DNA_methylase
Motif
Other DBs
NCBI-ProteinID:
UFP98828
LinkDB
All DBs
Position
complement(5041553..5042938)
Genome browser
AA seq
461 aa
AA seq
DB search
MAKHERGLRFQPTGGSKAPQIPTGKKQRLSIERLANDGRGIAFFEGKTWFVLGALAGEEV
EARVLGAHGKVVEARTERVFTASELRRPAPCQHAGRCGGCSVQHLPHNEQLALKQRMLAE
QLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVRWDSKAKKLEVGFRAAGSQDIVAISDCP
VLVQPLQPIMTRLPEMLRRLSKPQALGHVELFSGSSIAVLLRHMAPLSEADLTILKDFCA
FHEAQLWLHGEGEPQPVDDAQSLGYRLEQWDLQLAYRPGDFIQVNAGVNEAMVVQALDWL
KPTSDERVLDLFCGLGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQAD
LSQPLTDAQWIGNGFSAVLLDPPRDGAFEVVRKLATLGAERLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEASQDGSSDPTGRP
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccagcccaccggcggcagcaaggccccgcaa
atcccgaccggcaaaaagcagcgcttgagcatcgagcgcctggccaatgacggtcgcggc
atcgcgttttttgaaggcaaaacctggttcgtcctcggcgccctcgccggtgaagaggtc
gaagcccgggtgctcggcgcccacggcaaagtggtcgaggcgcgcaccgagcgcgtattc
accgccagtgaattgcgtcgtcccgcaccttgtcagcacgccggccgttgcggcggttgc
agcgttcagcatctgccccacaacgaacagcttgccctgaaacagcgcatgctcgccgag
cagttgtcgcgggtggctggtgccgagcccgaggagtgggcggcgccgttgaccggtccc
gaattcggctaccgtcgccgcgcccggatcgccgtgcgctgggacagcaaagccaaaaag
cttgaagtcggtttccgtgccgccggcagccaggacatcgtcgcgatcagcgactgcccg
gtgctggtacagcctttgcagccgatcatgacccgcttgccggagatgcttcgtcgcttg
agcaaacctcaggcgctggggcatgtcgaattgttcagtggctcgtcaatcgccgttctg
ctgcgtcacatggcgccgctgtccgaggccgacctgacgatcctcaaggatttctgcgcg
ttccatgaagcgcagctgtggctgcatggcgaaggcgaaccgcagccggtggatgatgcc
cagtcgctcggttaccgtctggaacaatgggacctgcaactggcctaccggccgggggac
ttcattcaggtcaacgccggggtcaacgaggccatggtcgtccaggcgctggactggttg
aaaccgacgagcgatgagcgcgtgctcgacctgttttgcggactgggcaacttcgccctg
ccgctggcgaaagccgcgcgtgaagtggtggcggtcgaaggcgtgcagaccatggtcgat
cgcgcggcggcgaatgccgccagcaacaatttgcataacacaaagttttttcaggccgat
ttatcccagcctttgaccgatgctcagtggatcggaaacggcttttctgcggtactcttg
gacccaccgcgcgacggtgctttcgaggtggtgcgcaagctggcgaccctgggcgcggaa
cggttggtgtacgtgtcgtgcaaccctgcaactctggcgcgcgatacggtcgaattgatc
aagcagggctaccggttaaaacgtgccgggattctcgatatgtttcctcagacggcacat
gtcgaggccatggcgttatttgaagcgagccaggatggctcgtctgatccgactggtcgt
ccgtag
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