Pseudomonas fitomaticsae: KJY40_26355
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Entry
KJY40_26355 CDS
T08740
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJY40_26355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfit03019
]
KJY40_26355
Enzymes [BR:
pfit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJY40_26355
Messenger RNA biogenesis [BR:
pfit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KJY40_26355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UFP99496
UniProt:
A0ABY3Q081
LinkDB
All DBs
Position
complement(5828807..5830147)
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AA seq
446 aa
AA seq
DB search
MTFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLL
QLLAMEGPKVTANSVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMK
LRGGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKR
QTLLFSATFSDDIRLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMR
KNKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNMLSAIE
MLTRSTLKREVEPDFVPEHRVPDTDASGQVIKKPKKPKKPKASGGGGGKRNLGKWVDSGE
TQAPEPSIKPVRKVPVFNTGPRKRKP
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgccacccttggcctgatcgaacccttgctgcgctccctcgagaagctcggc
taccagaccccgacgccggtgcaggcgcaggccattccggccgtgctggccggtcgtgac
ctgatggctgcggcccagaccggcaccggcaagaccgccggtttcgctttgccgctgctg
caactgctggcgatggaagggccgaaagtcaccgccaactcggtgcgcgcgctgattctg
gtgccgacccgcgagctggccgagcaagtccacgaggccgtgcgccagtacgccgaaaac
ctgccattgcgcacttacgcggtgtacggcggcgtcagcatcaacccgcagatgatgaag
ttgcgcggcggcgtcgatctgctggtcgcgaccccgggccgtctgctcgacctgttccgt
cagaacgcgttgaagttcaatcagctgcaaaccctggtgctggacgaggccgaccgcatg
ctcgacctgggcttttccgaagagctggcgaacatttaccgcgcgctgccgaagaaacgt
cagacgctgctgttctccgcgaccttctccgatgacatccgcctgctggccgggcagatg
ctcaacgatccgcagagcatcgaagtcagcccgcgcaacgtcgccgccaacaccgtcaag
cagtgggtggtgacggtggacaagaagcgcaagccggaactgttcgtgcacctgatgcgc
aagaacaagtggaagcaagtgctggtgttcgccaagacccgcaacggtgtggacgcgctg
gtcgagaaacttcaaggcctaggcgtgaacgccgacggcatccacggcgacaagccgcaa
gcgacccggcagcgggcgctggatcgtttcaaactgagcgaagtgcagattctggtggcc
actgatgttgctgctcgtggtctggatatcgaagacctgccgctggtggtcaactttgat
ctgccgatcgtggccgaggattacattcaccgtatcggtcgtactggccgcgcgggttcg
accggtgaggcgatctcgctggtgtgcgctgatgaagtgaacatgttgtcggcgattgaa
atgctgacccgcagcacgttgaagcgtgaggttgagccggatttcgtgcccgagcaccgt
gtgccggacaccgatgccagtggccaggtgatcaagaagccgaagaaaccgaagaagcca
aaagcttccggtggtggcggcggcaagcgcaatctgggcaagtgggtggacagcggcgag
acccaggcgccggagccttcgatcaagcctgtgcgtaaggtgccggtgtttaataccggg
ccgcgcaagcgtaagccttaa
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