Pseudomonas fitomaticsae: KJY40_27240
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Entry
KJY40_27240 CDS
T08740
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KJY40_27240 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfit03021
]
KJY40_27240 (rpoB)
03400 DNA repair and recombination proteins [BR:
pfit03400
]
KJY40_27240 (rpoB)
Enzymes [BR:
pfit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KJY40_27240 (rpoB)
Transcription machinery [BR:
pfit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KJY40_27240 (rpoB)
DNA repair and recombination proteins [BR:
pfit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KJY40_27240 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
UFP99666
UniProt:
A0ABY3Q0L4
LinkDB
All DBs
Position
complement(6006522..6010595)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKGEG
LSLELVPQRLRGEVAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELDVPLDYVLGR
TTAKAIVHPATGEILAECNTELSTEILAKIAKAGVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDDIVFLSAIEEADHVIAQASATMNEQKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaactttcgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatcccattgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggcaaactgctgtactccgcgcgcatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgctcggttatacc
accgaggaagtgctggacgcgttctacaccaccaacgtattccacgtgaaaggcgaaggc
ctgagcctggagctggtgcctcagcgcctgcgtggtgaagttgcggttctcgacatccag
gacgacaaaggcaaggtgatcgtcgagcagggccgtcgtattactgcccgccacatcaac
cagctggaaaaagccgggatcaaagagctggacgtgcctctggattacgttctgggtcgt
acgaccgccaaggcgatcgtgcatccggctaccggtgagatcctggcagagtgcaacacc
gagctgtcgaccgaaatcctggcgaaaatcgccaaggccggcgtcgtacgcatcgaaact
ctgtacaccaacgacatcgactgcggtccgttcgtttccgacacgctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctctgcactcggccct
ggcggtctgactcgtgagcgcgcgggcttcgaagtccgtgacgtacacccgactcactac
ggtcgtgtctgcccgattgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gctgcttacgctcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggtgaaa
gagggtgtggtcaccgacgacatcgtgttcctgtccgccattgaagaagccgatcacgtg
atcgcgcaggcttcggcgaccatgaacgagcagaaagtcctgatcgacgaactggtagct
gtacgtcacctgaacgaattcaccgtcaaggcgccggaagacgttaccttgatggacgtt
tcgccgaagcaggtagtttcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccaaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtggctcgcgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgattccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaaccggcgaagctggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgaactggct
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagtcggcgcaggcgacatcctggtaggcaaggtcactccgaaaggcgagacccagctg
actccggaagaaaaactgctgcgtgcgatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtgccaaccggcaccaaaggtactgtcatcgacgtacaggtcttcact
cgtgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagtcccagctggacgag
atccgcaaggatctgaacgaagagttccgcatcgttgaaggcgcgaccttcgagcgtctg
cgttccgctctggtaggccacaaggctgaaggcggcgcgggcctgaagaaaggtcaggac
atcaccgacgaagtactcgacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaagatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtggtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccggatggtcgaagaacagcgcaaagtcgctgagctgcgtacc
ttcctggacgagatctacaaccagatcggcggtcgtaacgaagatctggacagcttctcc
gatcaggaaatcctggatctggcgaagaacctgcgtggtggtgttcctatggccactcca
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
