Pseudomonas fitomaticsae: KJY40_28355
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Entry
KJY40_28355 CDS
T08740
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJY40_28355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfit03019
]
KJY40_28355
Enzymes [BR:
pfit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJY40_28355
Messenger RNA biogenesis [BR:
pfit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KJY40_28355
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
UFP99875
UniProt:
A0ABY3Q1F3
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All DBs
Position
6255674..6257551
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AA seq
625 aa
AA seq
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MSFASLGLSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEARERPDMRNPRNARGPRGDGPNGSGGGGG
RKDKGKDKGKEKPAGERGERGERPARQQKPREGTPAREQRQPSQPPRAAADRAPDEFLDD
DIDNFGNRVDYVPKQAPAGGRNRRPGAPAQGAGSGAPRGGQPQGRQNGPRNSNGSSTGTP
PGKRSGPRNGAPRDGQGRRDENSRNRRPARDDQQRAEPAVQNPRSSGPKIMHKESKADRF
PTPEQLDQLPSRPRGEKPALLTRNR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggtccgcgctatcgaagatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtaccggtaaaaccggcggtttcgcccttccgatcctg
gagcggctgttccccaacggccacccggacaaatcccagcgtcacggcccgcgccagccg
cgcgtgctggtcctgaccccgacccgcgaactcgcggcccaggttcacgacagcttcaag
atctacgcccgcgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggccatgtcccgtggcgtggacgtcctcgttgcgtgcccgggtcgtctg
ctcgacctgtgcggccagggcagcgtcgatctgtcccacgtcgaaatcctcgtgctcgac
gaagccgaccgcatgctcgacatgggttttgtccacgacgtgaagaaagtcctcgcgcgt
ctgccggccaagcgtcagaacctgctgttctcggcgactttctccaaagacatcaccgat
cttgccggcaagctgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgtatcgagcaacgcgtattccgcctgccggccagccacaagcgtgcgctgctg
gcccacctgatcaccgccggcgcgtgggaacaggtgctggtgttcacccgtaccaagcac
ggcgccaaccgtctggccgagtacctggacaaacacggcctgccggctgtggcgatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccaaccaggtg
cgcatcctggtggcgaccgacatcgcggcccgcggtctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaggcgatctcgctggtcgccccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagccggaagcccgcgaacgtccggacatgcgcaac
ccgcgcaacgcccgtggcccacgcggcgacggcccgaatggcagcggcggtggcggcggt
cgtaaagacaaaggcaaagacaagggcaaggaaaaaccggccggcgaacgcggtgaacgt
ggcgagcgtccagcccgtcaacaaaagccgcgtgaaggcaccccggctcgcgaacagcgc
cagccaagccagccgccacgcgccgctgctgaccgtgctccggacgaattcctcgacgac
gatatcgataacttcggtaaccgcgtcgactacgtgccgaagcaggctccggccggtggt
cgcaaccgtcgtccaggcgctccggcgcaaggcgcaggttcgggcgcaccacgcggcggt
cagccacaaggtcgccagaacggcccgcgcaacagcaacggttcgagcaccggtacgccg
ccaggcaaacgcagcggcccgcgcaacggtgccccgcgtgacggtcagggtcgccgcgat
gagaactcgcgcaaccgccgcccggcccgtgacgatcagcaacgcgctgaaccggccgtg
cagaacccgcgcagcagcgggccgaagatcatgcacaaggaatcgaaagccgaccgcttc
ccgacgcctgagcagctggatcaactgccaagccgcccacgcggtgaaaaaccggccttg
ctgacccgcaatcgctga
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