Pseudomonas fitomaticsae: KJY40_29185
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Entry
KJY40_29185 CDS
T08740
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJY40_29185 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfit03021
]
KJY40_29185 (rho)
03019 Messenger RNA biogenesis [BR:
pfit03019
]
KJY40_29185 (rho)
Transcription machinery [BR:
pfit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KJY40_29185 (rho)
Messenger RNA biogenesis [BR:
pfit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KJY40_29185 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
UFQ00036
UniProt:
A0ABY3Q1U2
LinkDB
All DBs
Position
complement(6425120..6426379)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NKSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgctaaaagcggtgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgctgacgcttcctacctcgctggccctgacgacatctac
gtctcgccgagccagatccgccgtttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcctgagaacgcgaagaacaagattctcttcgagaacctgaccccgctgttc
ccgaacgtgcgcatgaagatggaagccggcaacggttccaccgaagacctgaccggtcgt
gtgatcgacctgtgcgctccgatcggcaaaggccagcgcggtctgatcgttgcaccgccg
aaagccggtaaaacgatcatgctgcagaacatcgcagcgaacatcgcccgtaacaatcct
gaagttcacctgatcgtgctgttgatcgacgaacgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgaccttcgacgagccgccgacccgtcacgtg
caagtggctgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgatgcccatgccctggagaaaccgaagcgtttc
ttcggcgctgcgcgcaacatcgaagaaggcggctcgctgaccatcatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggcaccggcaac
atggagctgccactggaccgtcgtatcgccgagaagcgtgtgttcccggccatcaacatc
aacaagtccggtacccgtcgcgaagagctgttgactgccgacgacgaactgcagcgtatg
tggattctgcgcaagctgctgcacccgatggacgaagtcgccgccatcgagttcctggtc
gacaagctgaaaacgaccaagaccaacgacgaattcttcctgtcgatgaagcgcaagtaa
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